ggKbase home page

PLM0_60_b1_sep16_scaffold_672_11

Organism: PLM0_60_b1_sep16_Gemmatimonadetes_KBS708_61_15

near complete RP 41 / 55 MC: 4 BSCG 43 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(12089..15160)

Top 3 Functional Annotations

Value Algorithm Source
TonB-dependent receptor Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVX2_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 63.1
  • Coverage: 1003.0
  • Bit_score: 1305
  • Evalue 0.0
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 63.1
  • Coverage: 1003.0
  • Bit_score: 1305
  • Evalue 0.0
TonB-dependent receptor {ECO:0000313|EMBL:ACU06197.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.1
  • Coverage: 1003.0
  • Bit_score: 1305
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 3072
ATGCTAGTGGTCCGTCGCCTCCTTCTCCTGCTTGCCGGTGCCCTCTTTTGCGCCGCAGCACCCCTCAGTCCCCTCCGTGCGCAGCAACCCACGGGCACCATCACCGGGTTGGTCGTCGACAGCGCGACCCGACAGCCGATCGCTGGCGTCAATGTCGTGGTCGAAGGGACCCGACTCGGGACGATCACTCGTGATGACGGTACGTTCACCATCGCCGGCGTCCCTGCTGGAACGCACACGGTTCGCGCGCGCCGGATCGGCTACGGGTCGGTCCCGATGGTCGTCAACGTGTCGGACGGTGCGACGGTCTCAGTGGCGTTCGCGCTCGAGAAGCGAGCTGCGGTTCTCGATCAAATAGTGGTCGTTGGATATACGGCTCAACGGAAATCGACCATAACCGGTGCCGTGGCCACTGTGAATGCGGCTGATGTGGAGTCGCGAAGGGTTCCGGATGTCGCGCAGGCCTTACAAGGGCAAGTCGCCGGTTTGACGGTTACGCAAGGTACCGGCGCGCCGGGAGAGCCAATCCAGATCCGTATCCGTGGCGAAGGAACCATAGGTAACAACGATCCGCTATTCATCGTAGACGGAGTACCTACCCGCGACATCTCCTTTTTGAATCCCGCGGATGTGCAATCCTATACCGTGCTCAAGGATGCTTCTGCTGCCTCCATTTATGGCGCCAGGGCTGCTGGTGGCGTCATCGTGATTGTCACGAAGACCGGCGAAAGAGGGAAATCCAATTTCGACATCAACTACTATAGCGGCTTTCAAAGGGCGACTAATCTCCCGGTCATGCTGAATGCCACTCAGTACATGAACAAGATGGAGGAAGCCTGGAATAATTCCGGGTACGCTGGCACAAACCCGTATACGGCCGACAAGAGCCGGACTGATTTGGCTAACACCAATTGGCTGGATCAGCTATTTACGACGGGAAAATCGCAAAACCTGCAGCTGAGGGCGAGCGGAGGCAGTGACAAGGTGCAATACCTGCTTTCAGGAGCGTACTACAAGCAGGATGGTATAGTGATTTACTCGAATGACAGGTACCAGCGCTTCAATTTCAGGACGAACATCAATGCAGGGTTGACTGATCGCTTGAACGTTGGAACCAATCTTCTCCTTTCCTATGGCACCGAGGACAGCCTTTCCTCGCACGGAGATCAGCCCGGAATTATCCGTCATGCATTGATCAGACCTCCGATCATACCTGTCTATAAGGATCCAAGTGATCCTACATATTCCGCCAGCGATCCGTTTACCGATTTGCCTTTTTTTTCAAAGCCATGGGTTAAATCGAGTTTTCCTGCTAATCCATATGAGTTTGGCGCCAACCCCGTTGCCCTGGCCTATTTTGCCAACGCCCAGAGAACCAACTTCAAGACGTTCGGCAACATTTACGCAGAGTACGCTCTTTTGGACGCTCTAAAATTCAAGAGTAACCTTGGAGTCGATCTGAACCTGAGACACAGCAAGGCCTTTTATCAGAATTTCGGCGATGATGGCGGAGGAGCGGGTCCGTTAGACCAGGGAACCGGTCGTCAGAATCGTCCAACCGGCTTGAACGAAGACAGAGGGCAGGAAACCACCGTCACGTGGAACAACACGCTGAATTATGCCAAGGCCAATGAAACGCATGACATAAGTGCGCTCGCAGGCAGCGAGTACATCACCAACTACTCGTCTGGAGTCGGTGGATCGAGACAAAGATTCGATTACGTAAGGGAGAACTTTCAATATCTCAACTCCGGTGGATTGACGGATCAAAACACCGCAGGCTCTGCATCTGAATGGGGCCTTTTCTCTCTATTTAGCTCGGCAACCTACATGTTCGATACGCGGTACATGATTACAGGCAATTTCAGAGCAGATGCTTCTTCCAGGTTCGCCAAAAGCAATCAATGGGGCTATTTCCCGTCGGTTTCCGTTGGCTGGAAGATCTCCAACGAGCGTTTCATGCAGAATGTTGGCTGGATATCCGACCTGAAACTGAGAGCCAGCACCGGAAAGCTGGGCAACCAGGAAATCGCAAACTACGCTTTCCTGACTTTGCTCCGCAGATCCGGAGACCAGTTTCTCATTTCGCGCTATGGCAACCCCGATTTGAAATGGGAAACCACTTCACAACAAGACGTGGGGTTGGATGTGGGGGTGCTGAGTAACAGGCTCTCTCTTTCCCTCGACTACTTCGTAAAGAAGACATCCGACATTCTATTGCCCATTTCACTGCCTTCCATCGTAGGGAACGTCTCTCCAACCATCGTCAATGCGGGTGAAGTGAGTAACAAGGGATTCGAGCTCGGCATGAATCTCAGAAATAATGGTGGGCCGTTCAATTACGCAATAAACGGGAGCCTGGGTACCGTCAGGAATAGAGTGGAAAAATTGCACCCCAATTTGCCCAACATCGTCGGAGACGTATACAGGACAGCAGTAGGGCACCCCCTCGGCGCATTTTATGGCTACGTGATGGACGGCATCTATCAGGATCAGAATGAGATCAACACCTATTTATTCGGAACTCTGAATCCTCCAAACAAACCGGGAGACATAAAATTCAAGGACTTGAATGGCGATGGAAAGATCGACGATAACGACCGGACATTCATCGGAAATCCAATTCCGAAACTTTCCTACGGGTTGAATTTGTCCGGAGGCTACCATCGCTTCGATCTTGCCATGTTTTTTCAAGGGGTAGGCGGAGTCGACAAATACAACGACGCCAAGCAGATAACGGACTATGACAGCCGGCCCTTCAATCATAGTATCGCAGTATTGGGAGCCTGGAATGGCCCAGGTACCAGCAACACCATTCCCCGTACCACTTTCAACGACAATGGTAGCAGCAAGAAATCGAGCATCTTTGTGGAGGACGCGTCCTATTTCCGCCTCAAGAACCTCGAGGTCGGATATTCGCCGACTGCCACACGACGCCTGTTCGTATCCGGCCAGAACCTTTTTACAAAGACCAACTATACGGGATTGGACCCGGAATCCACGGATATTCTGGACAAGGGAACCTATCCGCAAATGAAATCATTCCTCGTCGGAATCAACGCGAAATTTTAA
PROTEIN sequence
Length: 1024
MLVVRRLLLLLAGALFCAAAPLSPLRAQQPTGTITGLVVDSATRQPIAGVNVVVEGTRLGTITRDDGTFTIAGVPAGTHTVRARRIGYGSVPMVVNVSDGATVSVAFALEKRAAVLDQIVVVGYTAQRKSTITGAVATVNAADVESRRVPDVAQALQGQVAGLTVTQGTGAPGEPIQIRIRGEGTIGNNDPLFIVDGVPTRDISFLNPADVQSYTVLKDASAASIYGARAAGGVIVIVTKTGERGKSNFDINYYSGFQRATNLPVMLNATQYMNKMEEAWNNSGYAGTNPYTADKSRTDLANTNWLDQLFTTGKSQNLQLRASGGSDKVQYLLSGAYYKQDGIVIYSNDRYQRFNFRTNINAGLTDRLNVGTNLLLSYGTEDSLSSHGDQPGIIRHALIRPPIIPVYKDPSDPTYSASDPFTDLPFFSKPWVKSSFPANPYEFGANPVALAYFANAQRTNFKTFGNIYAEYALLDALKFKSNLGVDLNLRHSKAFYQNFGDDGGGAGPLDQGTGRQNRPTGLNEDRGQETTVTWNNTLNYAKANETHDISALAGSEYITNYSSGVGGSRQRFDYVRENFQYLNSGGLTDQNTAGSASEWGLFSLFSSATYMFDTRYMITGNFRADASSRFAKSNQWGYFPSVSVGWKISNERFMQNVGWISDLKLRASTGKLGNQEIANYAFLTLLRRSGDQFLISRYGNPDLKWETTSQQDVGLDVGVLSNRLSLSLDYFVKKTSDILLPISLPSIVGNVSPTIVNAGEVSNKGFELGMNLRNNGGPFNYAINGSLGTVRNRVEKLHPNLPNIVGDVYRTAVGHPLGAFYGYVMDGIYQDQNEINTYLFGTLNPPNKPGDIKFKDLNGDGKIDDNDRTFIGNPIPKLSYGLNLSGGYHRFDLAMFFQGVGGVDKYNDAKQITDYDSRPFNHSIAVLGAWNGPGTSNTIPRTTFNDNGSSKKSSIFVEDASYFRLKNLEVGYSPTATRRLFVSGQNLFTKTNYTGLDPESTDILDKGTYPQMKSFLVGINAKF*