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PLM3_60_coex_sep16_scaffold_4604_2

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_7

near complete RP 46 / 55 BSCG 45 / 51 MC: 2 ASCG 11 / 38 MC: 3
Location: comp(1068..1661)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CY24_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 42.6
  • Coverage: 195.0
  • Bit_score: 122
  • Evalue 3.30e-25
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 42.6
  • Coverage: 195.0
  • Bit_score: 122
  • Evalue 9.50e-26
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA24265.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.6
  • Coverage: 195.0
  • Bit_score: 122
  • Evalue 4.70e-25

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 594
GTGCCCCGGAGCAGGTTGCGGTCGCGGGGGGTGGACCGGCGTTCCGACCGGGCGCTGCTGGCGCTGGTCGGCGGCGGGGACGCCAGCGCCATCGAGGCGCTGTACGACCGCTACGGCGGGCTCGCCTACTCGCTGGCCTGCCGCATCCTGTCCGACCCTGCCGCGGCCGGCGCCGTGGTCGAGGAGGTCTTCCTGGCCGCGTGGCGGGACGCCGGCCGGCTCGGCGCGGGCCCGGGCACGGTGGCCGCCGCCCTGCTGGCCGACACCCGCCGGCGGGCGGTGCGCGTCCTGCGCGCCAGGAAGCCGGACCCGGCGCTGGCGCTGGCCTCGGCGGCGGCGGGGGCGCCCGCGCTGGAGCCAGCCCCGCCCGGGGACCGGGAAGGCGACGGGCGGGCGGCGCGGGTCCGGCGGGCCCTGTCCGAGCTGCCCGAAGCCGAGCGCCGGGTGGTCGCCCTGGCCTGGCTCGGCTACACCGAGCACGAGGTGGCCCGCCTGGTCGGGCTGCGCCAGGGGACGGTCAGCAGCCGGATCGCCGCGGGGATGGGCCGGCTCAGGACGGCCCTGGCCACGCCCGAGGCAGAGCTGCACCCGTAA
PROTEIN sequence
Length: 198
VPRSRLRSRGVDRRSDRALLALVGGGDASAIEALYDRYGGLAYSLACRILSDPAAAGAVVEEVFLAAWRDAGRLGAGPGTVAAALLADTRRRAVRVLRARKPDPALALASAAAGAPALEPAPPGDREGDGRAARVRRALSELPEAERRVVALAWLGYTEHEVARLVGLRQGTVSSRIAAGMGRLRTALATPEAELHP*