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PLM3_60_coex_sep16_scaffold_21705_5

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_8

near complete RP 40 / 55 MC: 1 BSCG 42 / 51 MC: 2 ASCG 11 / 38 MC: 2
Location: 6424..6858

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 factor Tax=Amycolatopsis benzoatilytica RepID=UPI0003668AA7 similarity UNIREF
DB: UNIREF100
  • Identity: 42.8
  • Coverage: 138.0
  • Bit_score: 95
  • Evalue 4.20e-17
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:EMD29045.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 138.0
  • Bit_score: 94
  • Evalue 1.00e-16
RNA polymerase sigma70 factor similarity KEGG
DB: KEGG
  • Identity: 42.8
  • Coverage: 138.0
  • Bit_score: 93
  • Evalue 3.50e-17

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Taxonomy

Amycolatopsis azurea → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 435
ATGGCCGAGCTGACCCAGGTCGACGTGGAGGCGATGGTCCGGGACGCCCGGGCCGGTGACACCCATGCGCTGGGCCGGCTCTACGACACCTACCGCGACCGGGTGGTCCGGTTCGCGACCGGCAGGCTGGGCGACGCGGAGAAGGCGGAGGACGTGACCAGCGAGACGTTCGAGTCGGTGCTGCGCAACCTCGGCTCCTACCGGGCCGGCACCGACTTCGAGGCGTGGCTGTTCACCATCGCCCACCGCCGGGTCGCCGACCACTTCCGGCGCCGTTCACGCCGGCGCGAGGTCGAGCTGGACGAGACCGTCCACGCGACCGACCGGGGCGGGCGTGCCACCGTTGCCGGGCGCCTCCCGGCCGTCGCGGGGCCCGAGGAGGCGGTGCTGACCGCCGAGCGGCGGGCCGAGGTGGCCGGCGCCTTCCGGCGGCTC
PROTEIN sequence
Length: 145
MAELTQVDVEAMVRDARAGDTHALGRLYDTYRDRVVRFATGRLGDAEKAEDVTSETFESVLRNLGSYRAGTDFEAWLFTIAHRRVADHFRRRSRRREVELDETVHATDRGGRATVAGRLPAVAGPEEAVLTAERRAEVAGAFRRL