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PLM3_60_coex_sep16_scaffold_647_1

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: 1..831

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7B678_NOCDD similarity UNIREF
DB: UNIREF100
  • Identity: 89.9
  • Coverage: 276.0
  • Bit_score: 483
  • Evalue 1.00e-133
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAF50009.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.7
  • Coverage: 276.0
  • Bit_score: 485
  • Evalue 3.90e-134
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 89.9
  • Coverage: 276.0
  • Bit_score: 483
  • Evalue 3.00e-134

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Taxonomy

Rhodococcus wratislaviensis → Rhodococcus → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 831
ACACCGGCCTCGGCCGCCGCGCTCACGCTGCGCGCGGTCGGCGGCCTGACGACCACGCGGCAGATCGCGCAGGCCTACCTCGTGCCGGAGGCGACCCTGGCCCAGCGGATCAGCCGGGCCAAGCGGACCGTCTCGGGCGTCCGGTTCAACCAGCCCGGTGACGTCGCCACCGTGCTGCGCGTGCTCTACCTGGTCTTCAACGAGGGCTACTCCGGCGACGTCGACCTCGCCGCCGAAGCGATCCGGCTCACTCGCCAACTGGCGGCCAAGATCAACCACGAGGAGGTCGCGGGCCTGCTTGCGCTCATGCTGCTGCACCACGCACGGCGCCCGGCACGGACCGGCCCCGACGGCAGGCTCGTGCCCCTTGCCGAGCAGGACCGCAGCCTGTGGAACACCCGCCTGATCGCCGAGGGCGTCGATGTGCTCCAGACAGCCCTCACCCGAGACCGCCTGGGCGAGTTCCAGGCCCAAGCCGCCATCGCCGCGCTGCACGCCGACGCCCGGACGGTCGAGGAGACCGACTGGGTGCAGATCGTCGAGTGGTACGACGAACTGGTGCGCCTCACCGACAGCCCGGTGGCCCGCCTCAACCGGGCCGTCGCGGTCGGCGAGGCCGACGGCCCGCGGGCCGGCCTGGCCGCCCTGGCAGAGCTCGACCCCGCCCTGCCCCGCCACACCGCCGCCGCGGCGTACCTGCACGAGCGTGACGGTGACCCAGTGACCGCGGCACGGCTCTACGCCGAAGCCGCCCGATCAGCGCCCAGCCTCCCCGAACGTGACCACCTCACGCGACAGGCCGCACGGCTCAACGCGCAACTGCGCAGTTGA
PROTEIN sequence
Length: 277
TPASAAALTLRAVGGLTTTRQIAQAYLVPEATLAQRISRAKRTVSGVRFNQPGDVATVLRVLYLVFNEGYSGDVDLAAEAIRLTRQLAAKINHEEVAGLLALMLLHHARRPARTGPDGRLVPLAEQDRSLWNTRLIAEGVDVLQTALTRDRLGEFQAQAAIAALHADARTVEETDWVQIVEWYDELVRLTDSPVARLNRAVAVGEADGPRAGLAALAELDPALPRHTAAAAYLHERDGDPVTAARLYAEAARSAPSLPERDHLTRQAARLNAQLRS*