ggKbase home page

PLM3_60_coex_sep16_scaffold_1586_15

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: comp(12144..12743)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CY24_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 55.0
  • Coverage: 189.0
  • Bit_score: 193
  • Evalue 2.00e-46
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 55.0
  • Coverage: 189.0
  • Bit_score: 193
  • Evalue 5.80e-47
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA24265.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.0
  • Coverage: 189.0
  • Bit_score: 193
  • Evalue 2.90e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 600
GTGCGGGGAAAGGCCTATCGGGGTCTACAGGACGGGCAGCTCGTCCAGCTTGTCGTTGAGAAGGACGCGGGTGCCCTGGAAGTCCTGTATGACCGCTACGGGAAGGTCGCCTACTCGCTCGCGCGCCGGATCCTGACTGATGAGGTGTTGGCGCAGGACGTCGTCCAGGAGGTGTTCCTATCGCTGTGGCGTGACGCCCGCAGGTTCGACGCCGGGCGCGGGACCTTGGCCACCTACCTGCTGTCGATGACCCACCACCGGGCCGTCGACGTGGTGCGGCGCGAGGAGAACCTGCGCCGCCGGCGGACCTCCGACGAGGTGCTCGAGTTCCATCCCGACCCGGCACCCGGGGTCGAGGCCGAGGCCGAGGCGGCCGAGCGCCGGGCGGAGGTGCGCGCGGCGCTGGCGCAGTTGCCGCCCGCCCAGCGGGAGGCGCTGACCCTGGCGTACTTCGGCGGCTACACCCAGCGAGAGGTCGCAACCCTGGTAGGCGTCCCGCTCGGGACGGTGAAGACGAGAATGGCGGCCGGCATGCGCAAGCTGAAGGAGGCGTTGCGAGAGGCCGGTCGCGAGGAGCAGCAACCGTGGACACGCCAATGA
PROTEIN sequence
Length: 200
VRGKAYRGLQDGQLVQLVVEKDAGALEVLYDRYGKVAYSLARRILTDEVLAQDVVQEVFLSLWRDARRFDAGRGTLATYLLSMTHHRAVDVVRREENLRRRRTSDEVLEFHPDPAPGVEAEAEAAERRAEVRAALAQLPPAQREALTLAYFGGYTQREVATLVGVPLGTVKTRMAAGMRKLKEALREAGREEQQPWTRQ*