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PLM3_60_coex_sep16_scaffold_12818_4

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: 2192..2710

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003753ED3 similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 172.0
  • Bit_score: 120
  • Evalue 8.50e-25
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 45.9
  • Coverage: 183.0
  • Bit_score: 120
  • Evalue 4.10e-25
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABW09556.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.9
  • Coverage: 183.0
  • Bit_score: 120
  • Evalue 2.00e-24

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Taxonomy

Frankia sp. EAN1pec → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 519
GTGGCCGTGGACGACGCCGAGTTCAGCGAGTTCTTCGCCAGCCAGTACGGGCCCCTGTGCTGGCTGGGGCTGCTGCTGACCGGCAGCCGCGCCGAGGCCGAGGAGCTGGCCCAGGAGGCGCTGGTGCGCACCTGGTGGCGCTGGAAGCTGGTACGGCGGCCCGACAACCCCGGCAGCTACGCCCGCAGGGTGCTGGTCAACCGGCGCCGCTCGCTGCTGCGCCGCGCGGCCGTGGAGGCGCGGTCGCTGGCGCGGTCCCGGCCGCAGGAGCTGGTCGCGCCGGCCGGCGACGAGCGCGCTGTGGTGCTGTGGCAGGCCGTCCAGGCGCTGCCGGTGCGGCAGCGGGCGGTGCTGGTGCTGCGTTTCCGCGAGGACCTCACCGAGGCCGAGGTGGCGCGGCTGCTGGGGTTGCCGCTGGGCACGGTGAAGTCGCTCGGTCACCGGGCTCTGGCGCGGCTGCGGGAGCGGCTGGGCTCGCCCGGCCTCGACCCGGCGCGCAGCAGCGAGGAGGGACGATGA
PROTEIN sequence
Length: 173
VAVDDAEFSEFFASQYGPLCWLGLLLTGSRAEAEELAQEALVRTWWRWKLVRRPDNPGSYARRVLVNRRRSLLRRAAVEARSLARSRPQELVAPAGDERAVVLWQAVQALPVRQRAVLVLRFREDLTEAEVARLLGLPLGTVKSLGHRALARLRERLGSPGLDPARSSEEGR*