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PLM3_5_b1_sep16_scaffold_3568_4

Organism: PLM3_5_b1_sep16_Acidothermus_cellulolyticus_64_13

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(2018..2680)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PWK9_KRIFD similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 169
  • Evalue 2.70e-39
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 169
  • Evalue 7.50e-40
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 169
  • Evalue 3.70e-39

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Taxonomy

Kribbella flavida → Kribbella → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 663
GTGACGCAGTCCTCTCACGCGCGGATCGCTGCCGAGCCGGGCCGCGTTAGGGTGATTTCCGTGGTCGACGACGCGCGTCTCGAGCCGCAGGTGGCCGGCGAACATACCGATTGGCGCGCGGCGACTGAAGCCGAGCTCAGCATTGGCTTCGCCCGGGGCGACGAAGCCTGTTTGCAGGAGGTATTCCGGCGCCTGGCGCCATTGATCTACACGATTGCCTATCGCGCACTCGACAGCTCAAGTGACGGTGAGGAGATCACGCAGGAGGTGTTTGTGAGCGCTTGGCGTGCCCGCGACAACTATCAAGCGGAGAAAGGCAGCCTATCCGGCTGGCTGATCGGCATTACGCGGCACCGCATTGCCGACCGGCAGCGGGCCCGCGGCCGTGACCTGCGGCTCGTTCAAGCTGTGACCAACACCACCGACGCCCAAGTGCAACCTGAGATTTCGACATTGATCGACCGCATCGTGCTGACCGAGGAGATTGGCCGACTCCCCCATCCACGCGGCACGATCCTCCAGCTTGCCTTCTGGGAAGGACGCAGCTACCCGCAGATCGCCGACCAACTCGACCTCCCAGTAGGAACGGTGAAGAGCCACGCCCGGCGTGCCTTACGCCATCTGCGTACTCAGCTGGCGGAGGTGACGTCATGGCCCACCTGA
PROTEIN sequence
Length: 221
VTQSSHARIAAEPGRVRVISVVDDARLEPQVAGEHTDWRAATEAELSIGFARGDEACLQEVFRRLAPLIYTIAYRALDSSSDGEEITQEVFVSAWRARDNYQAEKGSLSGWLIGITRHRIADRQRARGRDLRLVQAVTNTTDAQVQPEISTLIDRIVLTEEIGRLPHPRGTILQLAFWEGRSYPQIADQLDLPVGTVKSHARRALRHLRTQLAEVTSWPT*