ggKbase home page

PLM3_5_b1_sep16_scaffold_3706_3

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(675..1379)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator Tax=Frankia sp. Iso899 RepID=UPI0003B559C6 similarity UNIREF
DB: UNIREF100
  • Identity: 59.8
  • Coverage: 234.0
  • Bit_score: 275
  • Evalue 3.70e-71
GAF domain-containing protein {ECO:0000313|EMBL:KJE24479.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.1
  • Coverage: 218.0
  • Bit_score: 143
  • Evalue 3.00e-31
putative GAF sensor protein similarity KEGG
DB: KEGG
  • Identity: 41.5
  • Coverage: 224.0
  • Bit_score: 142
  • Evalue 1.00e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 705
ATGCCGATGTCCGCGAGAGAGGTCCGCCAGGCGCTGCACGAGCTTGGGGACCTACGCTACGCCGTCGGCGATCTCGACGACGCCCTGCGCCGGATCGTCCACGCGACCCACAAGCTGTTCGCCGTCGACGGGGCCGGGCTGATGCTGATCGACCCGGACCAGCTCCTGCGCAACGTCGCCGACTCCGACGGGCGCGTCGACCACCTCGAGGAGCTCCAGATCGAGCACGGCGAGGGCCCTTGCATCGACGCCTTCGACGACAAGCAGCTGGTGCACGCGGCCGACCTGGCCGAGGAGAAGCGCTGGCCCGACTTCAGCCCGGCCGCGGTCGAGCGGGGTCTGCGGGCAGTGCTGGCCAGCCCCATCCCCTACAACCAGATGGCCATCGGGGTGGTGGCGGTGTACTCGGCCAAGGTCCGCCCCTGGTCGCCCGAGGGCGAGCTGGCGCTGATCGCCTTCACCGACCTGGCCGCCCTGACCATCGCCAACACCATGCAGAGCGAGCAGCGCGGCGAGCTGGCCACCCAGCTCCAGCGGGCCCTGGACGCCCGGGTCGTCATCGAGCAGGCCAAGGGCGCCCTGTGCGCCCGCGACGGCGTCACCCCCGGCCAGGCGTTCGAGCAGATGCGCCGCCGGGCCCGGGCCGAACGCCGCCGCGTCCTGGAGATCGCCCAGGAGATCATGTCGGGCGCCGACACCCGCTGA
PROTEIN sequence
Length: 235
MPMSAREVRQALHELGDLRYAVGDLDDALRRIVHATHKLFAVDGAGLMLIDPDQLLRNVADSDGRVDHLEELQIEHGEGPCIDAFDDKQLVHAADLAEEKRWPDFSPAAVERGLRAVLASPIPYNQMAIGVVAVYSAKVRPWSPEGELALIAFTDLAALTIANTMQSEQRGELATQLQRALDARVVIEQAKGALCARDGVTPGQAFEQMRRRARAERRRVLEIAQEIMSGADTR*