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PLM3_5_b1_sep16_scaffold_8089_2

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: 1972..3150

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B4P8_FRADG similarity UNIREF
DB: UNIREF100
  • Identity: 78.8
  • Coverage: 392.0
  • Bit_score: 588
  • Evalue 4.30e-165
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 78.8
  • Coverage: 392.0
  • Bit_score: 588
  • Evalue 1.20e-165
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.8
  • Coverage: 392.0
  • Bit_score: 588
  • Evalue 6.00e-165

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Taxonomy

Frankia symbiont of Datisca glomerata → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1179
ATGGCCATCGCCAAAGAGGCGCAGATCGACGAGGTACGCGACCTCGTCGCCAAGGGCAAGGAGCGTGGCTTCCTCACCAACGAGGAGGTCATCGAGGCCCTCGCCCCGGTCGACGTCTCGGCCGAGCAGATGGACAACATCCTGCAGCACCTGCAGGACGAGAACATCGAGGTCGTCGAGATGGTCGACGAGCTCGACGCCGAGGAGTTCGCCCGCGAGGCCCGCTCGGCCCGCGACGAGGAGCTGGCCCTCAAGGCCCCCACCAACGACCCCGTCCGCATGTACCTCAAGGAGATCGGCAAGGTGCCGCTCCTGACCGCGGAGCAGGAGGTCATCCTGGCCAAGGCGATCGACGAGGGCGAGGCCGCCACCGCCGAGATCGACAAGGCCACCGACAACGGCCGCAAGCTCACCCCGACCCGGTTGCGGGAGCTCCAGCGAACCGAGCGCCACGGCCAGCTGGCCAAGAAGAAGCTGATCGAGGCCAACCTGCGCCTGGTGGTGTCGATCGCCAAGCGGTACGTGGGCCGGGGGATGCTGTTCCTCGACCTGATCCAGGAGGGCAACCTCGGCCTCATCCGGGCCGTGGAGAAGTTCGACTACAACAAGGGCTTCAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATCACCCGGGCCATCGCCGACCAGGCCCGCACCATCCGCATCCCGGTGCACATGGTCGAGACGATCAACAAGCTGATCCGCATCCAGCGCCAGCTCCTCCAGGACCTGGGCCGCGAGCCCACCCCCGAGGAGATCGGCCGCGAGATGGAGTTCTCGCCCGAGAAGGTCCGCGAGATCCTCAAGGTGTCCCAGGAGCCGGTGTCGCTGGAGACCCCGATCGGCGAGGAGGAGGACTCCCACCTCGGCGACTTCATCGAGGACTCCGACGCCGTCGTCCCGGTCGACGCGGCCAGCTTCATCCTGCTCCAGGAGCAGCTCGACTCGGTCCTGCACACCCTGTCGGAGCGGGAGAAGAAGGTCATCCAGCTCCGCTTCGGCCTCACCGACGGCCACCCCCGCACCCTGGAGGAGGTCGGCCGCGAGTTCGGCGTGACCCGCGAGCGCATCCGCCAGATCGAGTCCAAGACCCTCTCCAAGCTGCGCCACCCCTCCCGCAGCCAGAAGCTCCGCGACTACCTGGAGTGA
PROTEIN sequence
Length: 393
MAIAKEAQIDEVRDLVAKGKERGFLTNEEVIEALAPVDVSAEQMDNILQHLQDENIEVVEMVDELDAEEFAREARSARDEELALKAPTNDPVRMYLKEIGKVPLLTAEQEVILAKAIDEGEAATAEIDKATDNGRKLTPTRLRELQRTERHGQLAKKKLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGREMEFSPEKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDSDAVVPVDAASFILLQEQLDSVLHTLSEREKKVIQLRFGLTDGHPRTLEEVGREFGVTRERIRQIESKTLSKLRHPSRSQKLRDYLE*