ggKbase home page

PLM3_5_b1_sep16_scaffold_11150_8

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(5685..6407)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Mycobacterium avium RepID=UPI00030DCBF8 similarity UNIREF
DB: UNIREF100
  • Identity: 55.1
  • Coverage: 234.0
  • Bit_score: 254
  • Evalue 6.90e-65
sigB; RNA polymerase sigma factor SigB similarity KEGG
DB: KEGG
  • Identity: 55.1
  • Coverage: 234.0
  • Bit_score: 254
  • Evalue 1.90e-65
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain JDM601).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.1
  • Coverage: 234.0
  • Bit_score: 254
  • Evalue 9.60e-65

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mycobacterium sinense → Mycobacterium → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 723
TGGGCCCGCCGCAAGATGATCGAGTCCAACCTGCGACTGGTCGTGTCCATCGCCCGCCGCTTCTCGGCCACCGGGCTGCCCCTGGGCGACCTGGTCCAAGAAGGCAACCTGGGCCTGCTCCGGGCGGTGGAGAAGTTCGACTGGCGCAAGGGGTTCAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATCGCCCGGGGGGCCGCCGACCGGGGCGCCCGGGCCATCCGGCTCCCGGTCCATGTCGATGAGCAGGTGGGCCGGTTGCGTCGCACCCAGACCCGGATGCATGAGCTCCTGGGTCGCGAGCCCACCGACGACGAACTGGCCGCCGAGCTCGACATGCCCACCGAGAAGGTCCACCGGCTCAAGGACACCGCGCAGGCCATCACGTCACTTGACACCCCGATCGGGGACGACGGGGCCGCCCTGCAGGACTTCCTGGAGGACGACTCGGCCGTGGGGCCCGACGAGCTGGCTGTTGAGGCGGTCGGCCGTGAAGCCCTCGAGCAGGTCCTGAACGCGCTGCCGGAGCGGGAGCGTCAGGTGCTGATCTTGCGCTTTGGGCTGGACTCGGGCACGCCCCGGACCTTGGAGGAGGTCGGCGCGGTCATGGGCTTCTCCCGCGAGCGCGCCCGCCAGGTCGAGCGCGACGCCCTGGCCGCCCTGCGCCGCCCCGAGGTCCGCGCCCGCCTCGACCTCGACGGGGCCGCCTGA
PROTEIN sequence
Length: 241
WARRKMIESNLRLVVSIARRFSATGLPLGDLVQEGNLGLLRAVEKFDWRKGFKFSTYATWWIRQAIARGAADRGARAIRLPVHVDEQVGRLRRTQTRMHELLGREPTDDELAAELDMPTEKVHRLKDTAQAITSLDTPIGDDGAALQDFLEDDSAVGPDELAVEAVGREALEQVLNALPERERQVLILRFGLDSGTPRTLEEVGAVMGFSRERARQVERDALAALRRPEVRARLDLDGAA*