ggKbase home page

PLM3_5_b1_sep16_scaffold_25162_5

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: 4016..5029

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWJ4_ACIC1 similarity UNIREF
DB: UNIREF100
  • Identity: 59.6
  • Coverage: 235.0
  • Bit_score: 262
  • Evalue 4.60e-67
RNA polymerase subunit sigma 28 similarity KEGG
DB: KEGG
  • Identity: 59.6
  • Coverage: 235.0
  • Bit_score: 262
  • Evalue 1.30e-67
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:ABK53804.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.6
  • Coverage: 235.0
  • Bit_score: 262
  • Evalue 6.50e-67

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidothermus cellulolyticus → Acidothermus → Acidothermales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1014
ATGACGCCCGACCGCTCCACCAGCGAGGACCAGCTGGTCCGTGGCCACCTCCACCTGGCCAGCCAGGCGGTGAACGAGCTGGCCCGCCGGCTGCCGCCCCACGTCAACCGCGACGACCTCTCGTCGGCGGCCATGCTCGGCCTCGCCCAGGCGGCCAGGAGCTGGGACCCCGACCGGGGGGCGAGCTTCGAGCGCCACGCCGCCACCCGCATCCGCGGTGCCCTGCTCGACGAGCTGCGCGACTCGGACTGGGCCAGCCGCTCGGTCCGCTCGCGGGCCCGGCGGCTCCAGCAGGCCGGTGAGGAGCTGACCGGGCGGCTCGGCCGGGCCCCGACCCAGGCCGAGCTGGCCGCCGAGCTGGGCACCGACGCCCAGGCCGTGCACAAGCTGGTCGACGACGTCCACCGGGCCACAGTGCTCAACTACGAGTCGATCGTGGCCGACGGCGAGGCCGGCGACCTGCTGCCCGGCGACGACCGCGCCCCCGACCATGTCCTGGTCGACCGGGAGCGGCGCGCATACCTGTCCGACGCCGTGCTCGCCCTGCCCGAGCGGCTTCGTGCCGTGGTCATCGGCTACTTCTTCCAGGAGCGGCCGATGCTGGAGATCGCCGGCGAGCTGGGCGTCACCGAGTCGCGCGTCTCCCAGCTCCGGGCCGAGGCCCTGATCCTGCTCCGCGACGGGCTCAACGCCCACCTCGACCCGGACACCCTCCCGGCCGAGCCCCGGCCGAGGGCCGCCTGGCCAAGCGCCGGGCCGCCTACCACGCCGCCATCGCCGCCTGCTCCGACTTCCGGGCCCGGCTCGACGCGGCGCCGCGGCCACTGCTCGAACGTGCCGCCGAGACCGGTTCGGCGACACCCTTTCCTGCCTGAATCCCCGTTCAGGCAACGGATTCGCTTGATCAGGTCATGGCTGCATAACATTTCCGAGTTCTCCCCTGAGCCTCCACGTCTTGCTCCCTTCCAGACGGTATGCTCCGTTCGCACCATGGCTCGAACGGTTGGAGAGTGA
PROTEIN sequence
Length: 338
MTPDRSTSEDQLVRGHLHLASQAVNELARRLPPHVNRDDLSSAAMLGLAQAARSWDPDRGASFERHAATRIRGALLDELRDSDWASRSVRSRARRLQQAGEELTGRLGRAPTQAELAAELGTDAQAVHKLVDDVHRATVLNYESIVADGEAGDLLPGDDRAPDHVLVDRERRAYLSDAVLALPERLRAVVIGYFFQERPMLEIAGELGVTESRVSQLRAEALILLRDGLNAHLDPDTLPAEPRPRAAWPSAGPPTTPPSPPAPTSGPGSTRRRGHCSNVPPRPVRRHPFLPESPFRQRIRLIRSWLHNISEFSPEPPRLAPFQTVCSVRTMARTVGE*