ggKbase home page

PLM3_30_b2_sep16_scaffold_158_10

Organism: PLM3_30_b2_sep16_Actinobacteria_70_20

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(8912..12256)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.1
  • Coverage: 1193.0
  • Bit_score: 951
  • Evalue 7.70e-274
transcription-repair coupling factor Tax=Frankia sp. BCU110501 RepID=UPI00036AE8B3 similarity UNIREF
DB: UNIREF100
  • Identity: 46.8
  • Coverage: 1189.0
  • Bit_score: 954
  • Evalue 8.40e-275
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 47.1
  • Coverage: 1193.0
  • Bit_score: 951
  • Evalue 1.50e-274

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. EAN1pec → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3345
GTGAGCCTGGAGCAGGCGCTCGACGCGCTGATCGGTTCGGAGGCGTTCGAACGCCTCCTGCTCGATCGCGCCCGCCCGGTCGTCGCCCGCGTGGAGGCGGGCGAGGACGCGCTGGTGGCGGCGCTCGCCCGGGCGCTCGGCGCGCCGGTGCTCCTCGTCGCGCCCGGGCCGCGGGAGGCGGAACGACTCGCCCGCGGGGCGCGAGCGTGGCTCGGGGACGACGGGGCGGCGCTCCTGCCCTCGTGGGAGGCGCTCCCGTACGAGGGGATCAGCCCCTCGCCGGAGGTCTCGGCGCGCCGTGCCGACGCCGTGCGCCGGCTGCGGGCGGCCAAGGGCGCGTTCGTCCTGGTCGCCCCCGCGCTCGCCGCGATGCAGGGCCTCGTCCCCACCCTCGGCGAGGTCCCGCCGGTCGAGCTGGTCAAGGGGATCGAGCTCCCGCCGGACGATCTCGCCGAGCGGCTCGTCGCGCTCGGGTACGCGCGCACGGACGTGGTCGAGCACCGCGGCGAGTTCGCGGTCCGCGGCGGGGTGCTGGACGTGTTCCCCGGGACCTCGCGCCGCCCGGTGCGCCTCGAGTACTGGGGCGACGAGATCGAGTCGCTCCGCGAGTTCGTCCCGTCGTCCCAGCTGTCGACCGGGCCCGTCGTCCGCGTCGAGGTGTCGCCCGTGCGCGAGCTCGTCCCCGACGACACGCTGGCCGAACGCGCGCGAACGCGAGCGCCCCGCTACCTCGACCGGTTCCGCGACGGGCTCGAGCGGATCGCCGAGGGCCTGCACGCCGAGGGGCTCGAGTCGCTCGCCCCCCTGCTGTTCGACCGGATGCCGGTCCCCGCCGAGCTGCTGCCGGAGGGCTCGTGGGTCGTGGTCTCCGAGGCCCGCCGCACCTTCGACCGGGCCCATCGGGCGTTCGAGGACGCCGAGGCGCTCGCCGAGGCCTCGAACTGGCCGGGGCCGCGCGCGGTCCACGATCTTGGGGAGGCGCTCGAGGGCCCGGTCCGGCTGGAGCTCACGGGGTTCACCGAGGGCATCGACACGGGTCTGCAGGGGTGGGGCTCGGCGCAGGGCAACCCCGCCGAGCTCGCGCGGCGAGCCTCGGAGCTCGCCGAGCGCGGGTACCGCGTGCTGCTCACGGCGCGCGGCCACGGCTCGCTGGAACGCGTCCGCGAGTTCGTCGCGCTGCCGACGGCCGAGCCGGTCGAGGCCGAGCTGCAGGCCGGCTTCGTCTTCCCGGCCGGGAGGCTCGCGGTGGCGACCGAGGAGGACCTGTTCGGTTCGCGCCGCCACACGCGCGACGTCCCGCGGTTCGCGACCCGCCGCGGCGACGCGATCGCCGAGGAGCTCGAGGTCGGCGACTTCGCGGTGCACCGCGTGCACGGCGTCGCCCGGTACGTGGGCGTGCAGCGTCGCGAGATCGGCGGCTCCGAACGCGACTACATGGTGCTCGAGTACGCCTCCGGCGATCGGCTCTCGGTCCCGACCGACCAGGTGGGGATGGTGGCGAAGTACCTCGGCGGCGAGACGCCCCGCCTGTCGCGACTGGGGACGAGCGACTGGGCGCGAACGACCGGGCGCGTGAAGCGCGCCGTGAAGGACATGGCCGGCGAGCTCGTGCGGCTGTACTCGGTCCGGCTCTCGATCGAACGCCCCCCGTACGGCCCCGACACGCCGTGGCAGATGGAGCTCGAGGACGCGTTCCCGCACGAGGAGACCGGCGACCAGGTCACGGCGATCGAGGAGGTCAAGGCCGACCTTCTGCGACCACGCCCGATGGACCGGTTGATCTGCGGCGACGTGGGGTTCGGCAAGACCGAGATCGCGGTGCGGGCCGCGTTCAAGGTCGTGATGGAGGGCAAGCAGGTGGCGGTGCTCGTGCCGACGACCCTGCTCGCCGAGCAGCACCTGATCACCTTCGGCGAGCGCTACGCGCCCTTCCCGGTCAAGGTCGCGATGCTCTCGCGCTTCGTCTCGAAGGCGGACCAGGAGCGCACCGTCGAGGACCTGCGCCGGGGAGCGGTCGACGTCGTGATCGGGACCCATCGGCTGCTGTCGGCCGACATCGGCTTCAAGGACCTCGGGCTCGTGGTGGTCGACGAGGAGCAGCGGTTCGGCGTGGCGCACAAGGAACGTCTGAAGAAGCTCCGCGCGCAGGTCGACGTCCTCACGATGACCGCAACCCCGATCCCCCGGACGCTCGAGATGGCTCTGGCCGGCATCCGCGACATGTCGACCGTCGACACGCCGCCCGAGGACCGGCAGCCGGTGCTCACCTACGTCGGACAGTACGACGAGGGGCTCGCGCTCGGCGCCGTCCGCCGCGAACTGCTCCGCGAGGGTCAGGTCTTCTGGGTCCACAACCGCGTCGCGACGATCGAACGCCAGGCCGCGTGGTTGCAGGAGCAGGTCCCCGACGCGCGGATCGTGGTCGCGCACGGTCAGATGGACGAGGACTTGCTCGAGCGGCGGATGATCCGGTTCTGGGACCGCGAGGCCGACATCCTGATGTCGACCGTCATCATCGAGTCCGGCCTGGACGTCCCGAACGCGAACACACTCGTCGTGGACGCGGCGAACCGGCTCGGGCTCGCGCAGATGTACCAGCTGCGAGGGCGCGTGGGGCGCAGCCACGAGCGGGCGTTCGCATACTTCTTCTTCCCGCCGCAGCGCGAGCTGACGGAGGAGGCGCACGAGCGGCTCACGACGATCGCGCGGCACCAGGCGCTCGGGAGCGGGTTCCAGATCGCGCTCCGCGACCTGGAGATCCGTGGAGCCGGCAACGTCCTCGGCGCCGAACAGCACGGCCACATCGCGGCGGTGGGGTTCGACACGTACGCTCGGCTGCTCCAGGAGTCGGTCGCGGAGATGCGGGGCGAGCCGCTGCCGGAGGAGAAGGAGATCCGGATCGACCTCCCGGTGAAGGCGTTCGTACCGCCGGGGTGGCTCGAGCAGGAGGCCTTGCGGCTCGACCTGTACCGGCGGATCTCCTCGGCCGGCGACCACGGCCTGCTCGAGCGCGTCCGCACCGAGACCGTGGACAGGTTCGGTCAGCTTCCGGATGAGGTCGAGACGCTGTTCGCCGTGGCGTCGCTCCGGATCACGTGCGCGAAGCTCGGCGTTGGCGAGGTCTCGACCTATCGGCAGCAGGTCCGCGTCAAGCCGCTCGACCTGCCCGAGCCGCTCGAACACGACCTGCCCGAACGCGTCCCCGGGGCCCGGTACCTGCGCACGACCGCGACCCTGAACCTCGACATCGGGCGCGTCCCGGGCTCGGAGCTCCCGTCGCTGGTGGAGCGCGGACTGGTCCGGGCCATGGGCGAAGACGAGGTCGTTGCTACGATGACCCCGTGA
PROTEIN sequence
Length: 1115
VSLEQALDALIGSEAFERLLLDRARPVVARVEAGEDALVAALARALGAPVLLVAPGPREAERLARGARAWLGDDGAALLPSWEALPYEGISPSPEVSARRADAVRRLRAAKGAFVLVAPALAAMQGLVPTLGEVPPVELVKGIELPPDDLAERLVALGYARTDVVEHRGEFAVRGGVLDVFPGTSRRPVRLEYWGDEIESLREFVPSSQLSTGPVVRVEVSPVRELVPDDTLAERARTRAPRYLDRFRDGLERIAEGLHAEGLESLAPLLFDRMPVPAELLPEGSWVVVSEARRTFDRAHRAFEDAEALAEASNWPGPRAVHDLGEALEGPVRLELTGFTEGIDTGLQGWGSAQGNPAELARRASELAERGYRVLLTARGHGSLERVREFVALPTAEPVEAELQAGFVFPAGRLAVATEEDLFGSRRHTRDVPRFATRRGDAIAEELEVGDFAVHRVHGVARYVGVQRREIGGSERDYMVLEYASGDRLSVPTDQVGMVAKYLGGETPRLSRLGTSDWARTTGRVKRAVKDMAGELVRLYSVRLSIERPPYGPDTPWQMELEDAFPHEETGDQVTAIEEVKADLLRPRPMDRLICGDVGFGKTEIAVRAAFKVVMEGKQVAVLVPTTLLAEQHLITFGERYAPFPVKVAMLSRFVSKADQERTVEDLRRGAVDVVIGTHRLLSADIGFKDLGLVVVDEEQRFGVAHKERLKKLRAQVDVLTMTATPIPRTLEMALAGIRDMSTVDTPPEDRQPVLTYVGQYDEGLALGAVRRELLREGQVFWVHNRVATIERQAAWLQEQVPDARIVVAHGQMDEDLLERRMIRFWDREADILMSTVIIESGLDVPNANTLVVDAANRLGLAQMYQLRGRVGRSHERAFAYFFFPPQRELTEEAHERLTTIARHQALGSGFQIALRDLEIRGAGNVLGAEQHGHIAAVGFDTYARLLQESVAEMRGEPLPEEKEIRIDLPVKAFVPPGWLEQEALRLDLYRRISSAGDHGLLERVRTETVDRFGQLPDEVETLFAVASLRITCAKLGVGEVSTYRQQVRVKPLDLPEPLEHDLPERVPGARYLRTTATLNLDIGRVPGSELPSLVERGLVRAMGEDEVVATMTP*