ggKbase home page

PLM3_30_b2_sep16_scaffold_112_2

Organism: PLM3_30_b2_sep16_Actinobacteria_70_20

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(856..1371)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Streptomyces acidiscabies RepID=UPI000287E50A similarity UNIREF
DB: UNIREF100
  • Identity: 33.9
  • Coverage: 165.0
  • Bit_score: 89
  • Evalue 2.70e-15
RNA polymerase ECF-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 33.5
  • Coverage: 158.0
  • Bit_score: 86
  • Evalue 6.50e-15
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 76.2
  • Coverage: 172.0
  • Bit_score: 257
  • Evalue 8.10e-66

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_19FT_COMBO_Actinobacteria_70_19_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGCAGGCAGAGGGCAACGTCGTCAGGTTGCCAGCGGCCGAGCCGGCCCCGCCCGACTTCGCGGCGTTCTTCGCCGAGGAGCACGCTGGGCTGTTCAAGGCCCTGTACTTCGTGACCGGGAACCGGTCCGACGCGGCCGAGCTCGCGCAGGATGCCTTCCTGAAGCTGTGGGAGCGATGGGATCGGATCGAACGGATCCACGATCCCACGGGGTACCTGTTCCGGGCGGCGCTCAACGGGTTCCGGATGCGGACGCGCGCCGCGGTTCGGGCCACCCGGAGGCTGGTGCCCATCGTCTGGACGACCGACCCGTTCGACGAGATCGATCTCCAGGAAGACGTCCGCAGGATGCTGCTCGACCTATCGCCACGGCAACGCGCCGCCCTCGTCCTGCTCGACATGTACGGCTACGGCTCCGAGGAGGCCGCACGGATCATGGGCATCCGTCCGTCGACCGTCCGCGCGCTCGCGACGCAGGGCCGTGCCGTGCTCCGAAAGGGGAGCCACCATGCCTGA
PROTEIN sequence
Length: 172
MQAEGNVVRLPAAEPAPPDFAAFFAEEHAGLFKALYFVTGNRSDAAELAQDAFLKLWERWDRIERIHDPTGYLFRAALNGFRMRTRAAVRATRRLVPIVWTTDPFDEIDLQEDVRRMLLDLSPRQRAALVLLDMYGYGSEEAARIMGIRPSTVRALATQGRAVLRKGSHHA*