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This organism can only be binned in the context of its binning project SCN18_14_9_16_R4_B. Please contact the project owner (rohansach@berkeley.edu) to become a member and gain access.

PLM3-1_50_b2_sep16_scaffold_18001_1

Organism: PLM6_50_b2_sep16_Deltaproteobacteria_54_7

near complete RP 41 / 55 MC: 1 BSCG 41 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 251..817

Top 3 Functional Annotations

Value Algorithm Source
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Jannaschia sp. (strain CCS1) RepID=CLPX_JANSC similarity UNIREF
DB: UNIREF100
  • Identity: 58.7
  • Coverage: 63.0
  • Bit_score: 79
  • Evalue 4.00e-12
clpX; ATP-dependent protease ATP-binding subunit ClpX similarity KEGG
DB: KEGG
  • Identity: 58.7
  • Coverage: 63.0
  • Bit_score: 79
  • Evalue 1.10e-12
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. CCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.3
  • Coverage: 63.0
  • Bit_score: 79
  • Evalue 5.70e-12

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Taxonomy

Roseobacter sp. CCS2 → Roseobacter → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGACGATGAGGGTTAAGAAATCAGCGATGGGTTTTGAGGAATGCGCGGATCTTATCAGCGATCAGAAGTACGGCTATGCGTTGCAAAGCTTCAAGCAGGCGGTGGGCAGGCTTGTGGAATCCAAAAGTTTCCCTAAGCGAAGCGAAGTCGCGCGGCAATTACTTGAGGTGGCAACGGCGTTGGAGGAGACCCTCAAGAAAACTTATGGCGATGGATGGGACGCGGACATTCCTCGATTTGTTGAAGAGGCCCAACTATCTTCCTGTTCCTTTTGCGGCAAAGAGCAACACGAAGTAAAAAAGCTCATCGCCGGTCTTGCTGTTTTCATCTGTGATGAGTGCGTAGAGCTCTGCAGGGGTATCATCGCCGAGGAGGGTGAACGCGATGCGAATGGAGCCGCAGGCTCCACGGCATCCGATGGAAATCCCAAAGCGGAACGTCTGTGCGGCATCTGCATGGAGCCCCGCGAAACAGACGAATTAGTCTTCCTGCCCCACGCCGCCTACCTCTGCGCGACATGTCTAGACGAAATTCAGACGGTTAGGGACAAGCAGACGGGGAAATAG
PROTEIN sequence
Length: 189
MTMRVKKSAMGFEECADLISDQKYGYALQSFKQAVGRLVESKSFPKRSEVARQLLEVATALEETLKKTYGDGWDADIPRFVEEAQLSSCSFCGKEQHEVKKLIAGLAVFICDECVELCRGIIAEEGERDANGAAGSTASDGNPKAERLCGICMEPRETDELVFLPHAAYLCATCLDEIQTVRDKQTGK*