ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM1_30_b1_sep16_scaffold_2522_7

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: 4419..5045

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Tax=Leptolyngbya sp. PCC 6406 RepID=L8L9K3_9CYAN similarity UNIREF
DB: UNIREF100
  • Identity: 59.0
  • Coverage: 200.0
  • Bit_score: 257
  • Evalue 9.20e-66
AraC family transcriptional regulator {ECO:0000313|EMBL:KIY10385.1}; species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.9
  • Coverage: 202.0
  • Bit_score: 252
  • Evalue 4.10e-64
ThiJ/PfpI domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 59.1
  • Coverage: 203.0
  • Bit_score: 249
  • Evalue 7.10e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mastigocladus laminosus → Mastigocladus → Stigonematales → Cyanobacteria → Bacteria

Sequences

DNA sequence
Length: 627
ATGCGGATCGCCGTCGTGGTGTTCGAGGGGTTCGACGAGCTGGACGCCATCGGTCCACTGGAGGTGCTGCGCAACGCCGCCACCATGGGCGGCGCCGGCCTCCAGGTGGACCTGGTCGCGCTCGACGGGGCGGCCGAGGTCACCGGGTCCCACGGCCTCCGGGTCCGGCCCGACGGCCCGCTCGACCCGGACCGGACCGACCTGCTGGTGGTGCCGGGCGGCGGCTGGAACGACCGCGCCCCCCAGGGCGCCAGGGCCGAGGCCGAGCGGGGCGAGCTGCCGGCGGCGATCGCCGCCGCCCACGAGGCCGGGGCCGTGGTGGCCACCGTCTGCACCGGGGCCATGCTGGCCACCGCCGCCGGCCTGACAAGGGGCCGCCCGGCCGTCACCCACCACGACGCCATCGACGACCTCCGGGCCGCCGGGGCCGAGGTGGTCGAGGCCAGGGTGGTCGACGACGGCGACCTGGTCACCGCCGGCGGGGTCACCTCGGGCATCGACATGGCCCTGTGGCTGGTCGAGCGCCACTTCGGGGCGGAGCTGGCCGACGCCGTGGCCGCCGAGATCGAGCACCCGCGCCACGGCGAGGTCTGGCGGGCTACGCCCGGGCAGCCGTCCGGTCGCTGA
PROTEIN sequence
Length: 209
MRIAVVVFEGFDELDAIGPLEVLRNAATMGGAGLQVDLVALDGAAEVTGSHGLRVRPDGPLDPDRTDLLVVPGGGWNDRAPQGARAEAERGELPAAIAAAHEAGAVVATVCTGAMLATAAGLTRGRPAVTHHDAIDDLRAAGAEVVEARVVDDGDLVTAGGVTSGIDMALWLVERHFGAELADAVAAEIEHPRHGEVWRATPGQPSGR*