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PLM1_30_b1_sep16_scaffold_2744_6

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(3998..4513)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037D07A0 similarity UNIREF
DB: UNIREF100
  • Identity: 42.4
  • Coverage: 165.0
  • Bit_score: 113
  • Evalue 1.80e-22
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 160.0
  • Bit_score: 112
  • Evalue 1.10e-22
RNA polymerase sigma-70 factor, sigma-E family {ECO:0000313|EMBL:KJE25259.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.5
  • Coverage: 171.0
  • Bit_score: 112
  • Evalue 3.20e-22

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 516
GTGGGTCCCGAGGACCGGCAGTTCCCCGAGTTCTTCGTCAGTGAGTACGGGCGGCTGCGCCGCCTGGGCTTCCTGCTGACCGGGAGCTGGACCGACGGCGAGGAGCTGGCCCAGGAGACGCTGGTCCGCATCTACTGGAGGTGGTCGCTGGTGCGCAGGCAGGAGCACCCGGAGGCCTACGCCCGCAAGGTGCTGGTGAACCGGCACCGGTCACTGCTGCGGCGGCTGCGCCTTGAGGCCAAGCACGCCGGCCGCGACCGCGCCGAGCCGGTCGACCTCGGCCCGCAAGAGGAGCTGATGGTGGTCCGGGCGGCCATCCGCCGGCTGCCGGCCCGCCAGCGGACGGTGCTGGTCCTCCGCTACCACCAGGACCTGCCCGAGCAGGAGGTGGCCCGGCTGCTGCGGATCCCGGTGGGCACGGTCAAGTCGCTCAGCAGCCGGGCCATGACCCGCCTGCGCCAGGACCTGGAGCGGCAGCTTCCCGACCGCGCCGACGTCCCGAGGGCACCCAAGTGA
PROTEIN sequence
Length: 172
VGPEDRQFPEFFVSEYGRLRRLGFLLTGSWTDGEELAQETLVRIYWRWSLVRRQEHPEAYARKVLVNRHRSLLRRLRLEAKHAGRDRAEPVDLGPQEELMVVRAAIRRLPARQRTVLVLRYHQDLPEQEVARLLRIPVGTVKSLSSRAMTRLRQDLERQLPDRADVPRAPK*