ggKbase home page

PLM1_30_b1_sep16_scaffold_3120_3

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(2167..2748)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Roseiflexus sp. (strain RS-1) RepID=A5USN6_ROSS1 similarity UNIREF
DB: UNIREF100
  • Identity: 49.4
  • Coverage: 180.0
  • Bit_score: 137
  • Evalue 7.50e-30
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 180.0
  • Bit_score: 137
  • Evalue 2.10e-30
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABQ89639.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.4
  • Coverage: 180.0
  • Bit_score: 137
  • Evalue 1.10e-29

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Roseiflexus sp. RS-1 → Roseiflexus → Chloroflexales → Chloroflexia → Chloroflexi → Bacteria

Sequences

DNA sequence
Length: 582
GTGCGTGCCGTGCGGGATGAGGCTGGGACCCGGACCGAGGGCCGGGAGCGGTTCGCTTCGGTGTTCAGGGAGCGGTACCGGGAGCTGTACGGGCTCGGGTACCGGCTGCTCGGGGACCATGGCGAGGCCGAGGACGTCGTGCAGGAGACCTTCCTCAAGCTCGACGGCCACCCGGTGCTGGAGCGGCCGGACGACGAGGTCGCGGCCTGGCTGCGGCGGGTCTGCCTGAACACCACCTACAACCGGCTGCGGGGCCAGCGCCGGGCCACGGCCCGCCTGGACCGGGCGGGCCGGGCGGAGCGGGCCGAGGACGAGACCGACGCCGGCGCCACCCCCCTCCTGGACGTGCTCAGGGCCGAGCAGCAGCGGGCGGTGCGCCAGGCGCTGGCCTCCCTGCCCGAGCGGCAGCGGGCCTGCCTGCTGCTGCGCCACGCCGGCTACTCGTACGCGGAGATCGCCGCGACCCTCGACCTCGCCGTCGGCTCGGTCGGGGTCCTGCTGGCCCGCGGCGAGCGGGCCTTCCGCGAGGCCTACCTCGACAGTGACGACCTCGACCCGGGAGCCTACGATGCCCTGCCCTGA
PROTEIN sequence
Length: 194
VRAVRDEAGTRTEGRERFASVFRERYRELYGLGYRLLGDHGEAEDVVQETFLKLDGHPVLERPDDEVAAWLRRVCLNTTYNRLRGQRRATARLDRAGRAERAEDETDAGATPLLDVLRAEQQRAVRQALASLPERQRACLLLRHAGYSYAEIAATLDLAVGSVGVLLARGERAFREAYLDSDDLDPGAYDALP*