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RifOxyA1_UNK

In projects: RIFOXYA1

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.70 Longest contig: 79.10 Kbp Bin length: 16.73 Mbp GC content: 44.57 %
Contigs count: 7788 Features count: 27774 rRNAs count: 6 tRNAs count: 0

Genome completeness

megabin RP 52 / 55 MC: 45 BSCG 49 / 51 MC: 46 ASCG 34 / 38 MC: 28
Displaying items 51-100 of 7606 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
rifoxya1_sub10_scaffold_13277 1 1179 bp 33.59 4.58 32.57
rifoxya1_sub10_scaffold_801
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 3232 bp 54.92 8.63 33.14
rifoxya1_sub10_scaffold_6718 2 1063 bp 49.95 2.26 33.30
rifoxya1_sub10_scaffold_7195 1 1028 bp 51.85 3.21 33.85
rifoxya1_sub10_scaffold_5291 2 1198 bp 44.82 3.01 34.06
rifoxya1_sub10_scaffold_2353 3 1810 bp 35.25 4.31 34.14
rifoxya1_sub10_scaffold_7360 2 1018 bp 57.56 3.83 34.18
rifoxya1_sub10_scaffold_2444
Species: RIFOXYA1_FULL_OP11_Pacebacteria_38_18_curated (100%)
2 1782 bp 42.70 3.37 34.51
rifoxya1_sub10_scaffold_1891
Class: Betaproteobacteria (66.67%)
3 2022 bp 50.40 4.60 34.72
rifoxya1_sub10_scaffold_503
Species: RIFOXYA1_FULL_OP11_Woesebacteria_31_71_curated (50%)
6 6216 bp 38.00 6.49 34.94
rifoxya1_sub10_scaffold_3869 2 1930 bp 39.22 3.89 34.97
rifoxya1_sub10_scaffold_4488 2 1301 bp 42.51 4.50 35.28
rifoxya1_sub10_scaffold_3929 3 1394 bp 43.47 3.87 35.29
rifoxya1_sub10_scaffold_4319 2 1326 bp 57.84 3.96 35.29
rifoxya1_sub10_scaffold_3468 2 1486 bp 30.42 3.84 35.33
rifoxya1_sub10_scaffold_6819 2 1055 bp 63.22 2.27 35.55
rifoxya1_sub10_scaffold_2917 2 1628 bp 42.51 19.63 35.57
rifoxya1_sub10_scaffold_4516 2 1297 bp 38.86 3.24 35.85
rifoxya1_sub10_scaffold_2526 2 1754 bp 39.74 4.19 35.92
rifoxya1_sub10_scaffold_3851 3 2141 bp 36.76 6.38 36.15
rifoxya1_sub10_scaffold_1883 2 2028 bp 41.81 8.43 36.24
rifoxya1_sub10_scaffold_4251 2 1337 bp 31.26 4.04 36.35
rifoxya1_sub10_scaffold_5721 2 1152 bp 51.22 3.13 36.72
rifoxya1_sub10_scaffold_6229 2 1105 bp 42.08 5.97 36.92
rifoxya1_sub10_scaffold_3411 2 1499 bp 43.63 3.00 37.22
rifoxya1_sub10_scaffold_5422
Species: RBG_16_Chloroflexi_68_14_curated (50%)
2 1183 bp 53.51 4.06 37.28
rifoxya1_sub10_scaffold_4837 3 1256 bp 41.16 3.34 37.74
rifoxya1_sub10_scaffold_4981
Species: Methanosarcina lacustris (50%)
2 1237 bp 32.50 3.88 37.83
rifoxya1_sub10_scaffold_13468 1 1133 bp 48.01 3.97 37.86
rifoxya1_sub10_scaffold_6658 3 1068 bp 42.51 3.09 37.92
rifoxya1_sub10_scaffold_6081 2 1118 bp 32.56 3.22 38.10
rifoxya1_sub10_scaffold_4465 2 1303 bp 38.14 3.68 38.22
rifoxya1_sub10_scaffold_2263 3 1849 bp 43.86 4.38 38.29
rifoxya1_sub10_scaffold_3422 3 1496 bp 55.61 4.81 38.50
rifoxya1_sub10_scaffold_5928
Species: marine sediment metagenome (100%)
1 1132 bp 35.60 2.65 38.69
rifoxya1_sub10_scaffold_2800
Species: Bacillus megaterium (50%)
2 1659 bp 45.51 5.97 39.24
rifoxya1_sub10_scaffold_6770 1 1060 bp 39.72 3.11 39.34
rifoxya1_sub10_scaffold_3997 2 1380 bp 31.16 3.04 39.35
rifoxya1_sub10_scaffold_5797
Species: marine sediment metagenome (100%)
1 1145 bp 38.60 3.41 39.83
rifoxya1_sub10_scaffold_7483 1 1010 bp 44.95 5.35 40.10
rifoxya1_sub10_scaffold_6544
Species: GWC1_OP11_46_16 (100%)
1 1077 bp 46.15 3.90 40.11
rifoxya1_sub10_scaffold_4044
Species: Parcubacteria bacterium GW2011_GWC1_43_61 (50%)
2 1373 bp 39.48 4.15 40.42
rifoxya1_sub10_scaffold_7042 1 1038 bp 40.66 3.18 40.46
rifoxya1_sub10_scaffold_7203 3 1028 bp 41.83 2.63 40.86
rifoxya1_sub10_scaffold_7434 1 1013 bp 42.45 6.81 40.87
rifoxya1_sub10_scaffold_4781 2 1261 bp 47.42 5.47 40.92
rifoxya1_sub10_scaffold_4509 3 1298 bp 40.45 3.00 41.14
rifoxya1_sub10_scaffold_5265
Species: RIFOXYD1_FULL_OP11_Woesebacteria_40_21_curated (100%)
2 1202 bp 42.35 3.49 41.18
rifoxya1_sub10_scaffold_14221 3 1454 bp 30.88 4.33 41.88
rifoxya1_sub10_scaffold_5837
Species: RIFOXYC1_FULL_Bdellovibrionales_37_79_curated (66.67%)
3 1141 bp 31.29 2.37 42.07
Displaying items 51-100 of 7606 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.