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PLM2_5_b1_sep16_scaffold_43487_4

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 3136..3654

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-subfamily sigma factor Tax=Micromonospora lupini str. Lupac 08 RepID=I0KWD0_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 52.5
  • Coverage: 181.0
  • Bit_score: 159
  • Evalue 2.80e-36
RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:CCH15877.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.5
  • Coverage: 181.0
  • Bit_score: 159
  • Evalue 3.90e-36
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 174.0
  • Bit_score: 155
  • Evalue 8.80e-36

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Taxonomy

Micromonospora lupini → Micromonospora → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGGGCGACGACGAGGGATTCCGCGAGTTCGTGACCGCGCGGTCGCCGGCGCTGTTGCGGACGGGGTACCTCCTGCTCGGTGACCGGGCACTGGCCGAGGACCTGCTGCAGACCGCCCTGGTCAAGGCGTACCGGCACTGGGGGCGGGTGACCGCCACCGGGAGCCCAGAAGCGTACGTGCGGCGGATCATGGTCAACGAGCGGCGCACCTGGTGGCGCCGCAACCCGGGCCGCGAGCTCGTCGGCAGCGTCCCCGACCGCCCCGGCCCGGACGAGTCGAGCGCGCTGGCCGAGCGGGACGCCGTGTGGCGGGCCGTGCTGACGCTGCCGCCGCGGACCCGGGCGGTGCTGGTGCTGCGCTACTGGGAGGACCGGTCCGAGGCGGAGAGCGCGGAGCTGCTCGACTGCTCGGTCGGCACGGTGAAGAGCCTCGCGTCGCGCGGGCTGCGGCGGCTGGCGGACGTGCTGGCCGAGGACCGGCGGCCGGCGGCCGGGACGCGCGAGGGAGGTGCCGGATGA
PROTEIN sequence
Length: 173
MGDDEGFREFVTARSPALLRTGYLLLGDRALAEDLLQTALVKAYRHWGRVTATGSPEAYVRRIMVNERRTWWRRNPGRELVGSVPDRPGPDESSALAERDAVWRAVLTLPPRTRAVLVLRYWEDRSEAESAELLDCSVGTVKSLASRGLRRLADVLAEDRRPAAGTREGGAG*