ggKbase home page

PLM2_30_b1_sep16_scaffold_401_25

Organism: PLM2_30_b1_sep16_Chthoniobacter_flavus_55_21

near complete RP 44 / 55 MC: 1 BSCG 46 / 51 ASCG 12 / 38
Location: comp(25098..25634)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XK22_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 54.6
  • Coverage: 174.0
  • Bit_score: 183
  • Evalue 1.10e-43
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59845.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.6
  • Coverage: 174.0
  • Bit_score: 183
  • Evalue 1.50e-43
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 52.5
  • Coverage: 181.0
  • Bit_score: 168
  • Evalue 1.40e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 537
GTGGAGTTAACTGATGCGGATCTTGTTGCGCGAGTTCTTCTCGATGACGATCAGTACGCATTCGGCGAGCTCGTGCGCCGGCATCAATCCAGTGTGCGTGGCCTGCTGCGGCAACTCACCCGCACAGACCTCGCGTTGGCCGACGATCTCGCGCAGGAAGCCTTCATTCGCGCTTACAAGAACATTCGGAGCTTTCGCGGTGAAGCGCGGTTTTCCACATGGCTTTACCGCATCGCGTACAATTGTTTTCGCGAGGACGCACGCAAGCGGAAGGACCTTGTCGGCGTGGATGAGGCGCAATTGCAGGCTGAACACGATCCGCAGACTGTCGATGCCGGTTTGAGACATGATCTTATGCACGCCCTGAGTTTACTTCCCTTGCACGAGCGCACGGCTGTTGTGCTTTGCTGTCAGAAAGGATTATCGCATGATGAAGCTGCGCGCGTCCTCGATATTCCGCTCGGTACGGTAAAAACGAATGTGCTCAGAGGACGCGAAAAACTAAAACGCACACTCGCCGCGTGGGGACCGAATTGA
PROTEIN sequence
Length: 179
VELTDADLVARVLLDDDQYAFGELVRRHQSSVRGLLRQLTRTDLALADDLAQEAFIRAYKNIRSFRGEARFSTWLYRIAYNCFREDARKRKDLVGVDEAQLQAEHDPQTVDAGLRHDLMHALSLLPLHERTAVVLCCQKGLSHDEAARVLDIPLGTVKTNVLRGREKLKRTLAAWGPN*