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ERMGT100_2_curated_scaffold_1

Search features with annotation key words

Displaying items 271-300 of 416 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_1_265
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(308169..310286)
-----------------
DNA (2118bp)
protein (706aa)
Prolyl oligopeptidase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFZ2_RHOMR
peptidase S9A prolyl oligopeptidase domain protein beta-propeller
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ERMGT100_2_curated_scaffold_1_266
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

310345..312675
-----------------
DNA (2331bp)
protein (777aa)
id=5225550 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_267
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(312727..313479)
-----------------
DNA (753bp)
protein (251aa)
alias=16ft_combo_ws3_scaffold_3265_19 id=24474967 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_268
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

313581..315731
-----------------
DNA (2151bp)
protein (717aa)
ATP-dependent DNA helicase RecG n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJB5_THEM7 id=5223798 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ATP-dependent DNA helicase RecG
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_269
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

315745..316704
-----------------
DNA (960bp)
protein (320aa)
NAD-dependent epimerase/dehydratase id=24437376 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NAD-dependent epimerase/dehydratase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_270
unknown

Not on your lists

316701..317171
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_271
unknown

Not on your lists

317168..318160
-----------------
DNA (993bp)
protein (331aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_272
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(318164..319489)
-----------------
DNA (1326bp)
protein (442aa)
Arabinose efflux permease family protein n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HHP3_ACIS0 id=5223802 bin=16ft_combo_ws3_JS1 species=unknown genus=Aciduliprofundum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
arabinose efflux permease family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_273
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(319498..320643)
-----------------
DNA (1146bp)
protein (382aa)
Glycosyl transferase group 1 n=3 Tax=Anaeromyxobacter RepID=B4UJW7_ANASK id=5223810 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
group 1 glycosyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_274
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(320640..321533)
-----------------
DNA (894bp)
protein (298aa)
Lipid A biosynthesis acyltransferase n=2 Tax=Selenomonas RepID=C9LSC9_SELS3 id=5223811 bin=16ft_combo_ws3_JS1 species=unknown genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lipid A biosynthesis acyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_275
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

321782..322201
-----------------
DNA (420bp)
protein (140aa)
id=5223812 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_276
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

322482..323639
-----------------
DNA (1158bp)
protein (386aa)
GTPase-like protein n=1 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RJX6_FIBSS id=5223813 bin=16ft_combo_ws3_JS1 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
GTPase-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_277
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

323683..324117
-----------------
DNA (435bp)
protein (145aa)
GTPase-like protein; K06883 id=24582052 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_278
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

324222..324908
-----------------
DNA (687bp)
protein (229aa)
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] id=24582051 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tryptophan synthase subunit alpha
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_279
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(325190..327595)
-----------------
DNA (2406bp)
protein (802aa)
Protein serine phosphatase with GAF(S) sensor(S) n=2 Tax=Rhodothermus marinus RepID=D0MDK1_RHOM4 id=5223816 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protein serine phosphatase with GAF(s) sensor(s)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_280
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

327819..328022
-----------------
DNA (204bp)
protein (68aa)
carbon storage regulator CsrA; K03563 carbon storage regulator id=24582048 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
carbon storage regulator, CsrA
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_281
unknown

Not on your lists

328096..328194
-----------------
DNA (99bp)
protein (33aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_282
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

328306..329505
-----------------
DNA (1200bp)
protein (400aa)
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DL77_DESVM id=5223819 bin=16ft_combo_ws3_JS1 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
signal transduction histidine kinase, nitrogen specific, NtrB
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_283
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

329447..330868
-----------------
DNA (1422bp)
protein (474aa)
sigma-54-dependent transcriptional response regulator id=24582045 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
two component sigma54 specific Fis family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_284
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

331225..331620
-----------------
DNA (396bp)
protein (132aa)
two component sigma54 specific Fis family transcriptional regulator id=24582044 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
transcriptional regulatory protein ykoG
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_285
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

331614..331913
-----------------
DNA (300bp)
protein (100aa)
id=5223822 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_286
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

331910..332161
-----------------
DNA (252bp)
protein (84aa)
id=5223823 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_287
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

332158..333066
-----------------
DNA (909bp)
protein (303aa)
Site-determining protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XFF2_THEPJ id=5223824 bin=16ft_combo_ws3_JS1 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ATPases involved in chromosome partitioning
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_288
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

333083..333916
-----------------
DNA (834bp)
protein (278aa)
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0LC35_MAGSM id=5223825 bin=16ft_combo_ws3_JS1 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
FliA/WhiG family RNA polymerase sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_289
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

333925..334935
-----------------
DNA (1011bp)
protein (337aa)
Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E4F2_9GAMM id=5223827 bin=16ft_combo_ws3_JS1 species=Thiorhodospira sibirica genus=Thiorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_290
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

334946..336640
-----------------
DNA (1695bp)
protein (565aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3) id=24565686 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
two-component hybrid sensor and regulator (EC:2.7.3.-)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_291
Caldisericum exile, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

Not on your lists

336802..337731
-----------------
DNA (930bp)
protein (310aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:BAL81651.1}; EC=5.1.3.2 {ECO:0000313|EMBL:BAL81651.1};; TaxID=511051 species="Bacteria; Caldiserica; Caldisericia; Caldisericales; Caldisericaceae; Caldisericum.;" source="Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01).;"
UDP-glucose 4-epimerase n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GLL4_CALEA
ERMGT100_2_curated_scaffold_1_292
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(337728..339302)
-----------------
DNA (1575bp)
protein (525aa)
id=5223835 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_293
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


339435..342074
-----------------
DNA (2640bp)
protein (880aa)
valS; valyl-tRNA synthetase ValS (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LD66_THEPS id=5223836 bin=16ft_combo_ws3_JS1 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_294
unknown

Not on your lists

342080..343570
-----------------
DNA (1491bp)
protein (497aa)

This feature has no annotations

Displaying items 271-300 of 416 in total

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