ggKbase home page

SCN18_25_8_15_R4_B_scaffold_71_214

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 208018..208293

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UR18_PSEUP similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 93.0
  • Bit_score: 142
  • Evalue 1.40e-31
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 87.0
  • Bit_score: 143
  • Evalue 1.20e-31
hfq; RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 80.6
  • Coverage: 93.0
  • Bit_score: 142
  • Evalue 4.10e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CN-SCN_Arenimonas_307x → Arenimonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 276
ATGTCGAAGTCGCAGTCCTTGCAGGATCCGTTCCTGAACGCGTTGCGCCGCGAGCGCGTGCCGGTGTCGATCTACCTGGTCAACGGCATCAAGCTGCAGGGGACGATCGAATCGTTCGACCAGTTCGTGGTCCTGCTGCGCAATACCGTCAGCCAGATGGTCTACAAGCACGCCATTTCGACCGTGGTGCCGGCGCGCAATGTGCGCCTGGGGGCGGCCGGCGCGCAGGAGGCGGACGAGGGCGCAGCCCCGGCACCGCATGCCGAGGCGGAATGA
PROTEIN sequence
Length: 92
MSKSQSLQDPFLNALRRERVPVSIYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAISTVVPARNVRLGAAGAQEADEGAAPAPHAEAE*