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SCN18_31_3_15_R5_B_scaffold_2653_2

Organism: SCN18_31_3_15_R5_B_SCN_pilot_derep_Thiobacillus_3_64_826

near complete RP 52 / 55 BSCG 50 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(1506..3236)

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] id=12493505 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 576.0
  • Bit_score: 1130
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 572.0
  • Bit_score: 1032
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 90.9
  • Coverage: 572.0
  • Bit_score: 1032
  • Evalue 0.0

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113 → SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113 → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1731
TTGCGCGCGGCGCGCGAAGGCCACGCATTCAAATTCTCGCCGCATGACTACGAAGCCTTCACCGAAGGTTTCGGCTACGAGGAAACCCCCGACCAGGCCGCGGCGATCGCGGCGGTCATGGCCGACATGCAGACGGGAAAACCGATGGACCGGCTGGTGTGCGGCGACGTCGGATTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCCTTCATGGCGGTGATGGGCGGTTACCAGGTGGCCGTACTGGTCCCGACCACGCTCTTGGCCGAGCAGCACTTCAATAATTTCTCCGACCGCTTCTCCGCCTGGCCGGTGAAGCTGGCCGAGCTGTCGCGTTTCCGCAGCCCCAGAGAGCAGGCCGAGGCGCTGCAGGCGCTCGCCGACGGCAAGCTCGACATCGTCATCGGCACCCACCGGCTGATCCAGAAGGACGTGAAATTCGCGCGTCTGGGCCTGGTGATCCTGGACGAGGAACACCGCTTCGGGGTGCGCCAGAAGGAGCAGTTGAAGGCCCTGCGCGCCGAGGTGGATGTGCTGACCCTGACCGCCACGCCGATCCCGCGCACGCTGGCGATGTCGCTCGAAGGTATCCGCGATTTTTCGGTCATTGCCACCGCGCCGCAGAAGCGGCTGGCGATCAAGACCTTCGTGCACCCGTTTTCAAATGGCCTGATCCGCGAGGCGGTGTTGCGCGAACTGAAACGCGGCGGCCAGGTGTACTTTCTCCACAACGAGGTCAGCACCATCGAAACCATGCGCGAGCGCCTGGAAAAGCTGCTGCCCGAAGCACGCATCCGCGTCGGCCACGGCCAGATGGGCGAGCGTGAACTGGAACAGGTGATCCGCGATTTCTACCAGCAGCGCTACGACATCCTGCTGTGCACCACCATCATCGAGACCGGCATCGACATCCCGACCGCCAACACCATTCTCATCAACCGCGCCGACCGATTCGGCCTGGCGCAGCTGCATCAGCTAAGAGGCCGGGTCGGACGCTCGCATCACCAGGCCTTCGCCTACCTGCTGGTGGACGAGGACCGCTCCCTGACGCCGCAGGCAAAAAAACGCCTGGAAGCCATTCAACTGATGGAAGAACTCGGCTCCGGTTTTCATCTCGCCATGCAGGACCTGGAAATCCGCGGCGCCGGCGAAGTGCTGGGCGACAAGCAGAGCGGCGAGATTCTTGAAGTCGGCTTCCCGCTCTACAACGACATGCTGGCCGGCGCGGTGGCGAGCCTCAAGGCCGGCAAGGAGCCCGACATGAACCAGCCGCTCGGCGTCGTGTCGGAAATCAATCTGCACCTGCCCGCGCTGCTGCCGACGGATTACTGCCCCGACATCCACGAACGGCTGGTGCTGTACAAGCGGCTGGCGAGTTGCCAGACGCCTGACGATCTGACGGCGATGCAGGAAGAACTGATCGATCGTTTTGGCGCACTGCCCGATACGGCCCGTGCCCTGCTGGCCGTGCACCGTCTGCGCATGTCGACCCGCCCCTACGGCATTGCCCGGCTGGACGTGTCCGGCGAGGGCATGAACGTGCAATTCGTCCCCAACCCGCCCATCGATCCGGGTAGAATCCTCCAGTTGATCCAGGGCAAGGCCGGCTACCGGCTCGCCGGCCCCGACCGGCTGAAACTGGCCACGCCCCTGCCCGATGTCAACCGGCGGGTCGGTGCAGTCACCGCATTCCTCGCCGCGCTCGGCGATCCCATTCCAACCGAACCCTAA
PROTEIN sequence
Length: 577
LRAAREGHAFKFSPHDYEAFTEGFGYEETPDQAAAIAAVMADMQTGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFNNFSDRFSAWPVKLAELSRFRSPREQAEALQALADGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAIKTFVHPFSNGLIREAVLRELKRGGQVYFLHNEVSTIETMRERLEKLLPEARIRVGHGQMGERELEQVIRDFYQQRYDILLCTTIIETGIDIPTANTILINRADRFGLAQLHQLRGRVGRSHHQAFAYLLVDEDRSLTPQAKKRLEAIQLMEELGSGFHLAMQDLEIRGAGEVLGDKQSGEILEVGFPLYNDMLAGAVASLKAGKEPDMNQPLGVVSEINLHLPALLPTDYCPDIHERLVLYKRLASCQTPDDLTAMQEELIDRFGALPDTARALLAVHRLRMSTRPYGIARLDVSGEGMNVQFVPNPPIDPGRILQLIQGKAGYRLAGPDRLKLATPLPDVNRRVGAVTAFLAALGDPIPTEP*