LOCUS S_scaffold_2387 3131 bp DNA linear BCT AUG-10-2026 DEFINITION S_scaffold_2387, contig. ACCESSION S_scaffold_2387 VERSION S_scaffold_2387.1 GI: KEYWORDS . SOURCE S_Thermovirga_lienii_47_9 ORGANISM S_Thermovirga_lienii_47_9 Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria. COMMENT Data sourced from ggkbase. For additional details see https://ggkbase.berkeley.edu/organisms/4057 FEATURES Location/Qualifiers source 1..3131 /organism="S_Thermovirga_lienii_47_9" /mol_type="genomic DNA" gene <3..1064 /locus_tag="S_scaffold_2387_1" CDS <3..1064 /product="competence/damage-inducible protein CinA" /codon_start=1 /transl_table=11 /translation="WLGKVDLIVLSGGLGPTHDDVTREAVSRLLGRPLVLREDLYASI LARYAGPIKEAVERSKHKQALIPEGAEGIYNPLGSALAFKVNLMDTEIFVLPGVPREF KAIAEERVLPALDKGGKVREVIRVVGWPESILKDKLKGLLEEFKEVKLSILPSPNLIK LSLWGTPGDVYNAANYVRDLLSEDILPQGASSLAEAVLLEAEKKQAPVALAESCTGGL LGASLTQIPGASKVFLGGVVCYSNESKIRILKVPEKVIRDHGAVSPECAEAMALGAKE LLGSDFALSVTGIAGPDGGTEEKPVGTVCFAISSPKGLETFQRQFFGDRSNIRDWAVA FGLEKLWRAIKGGCEGGAR*" /db_xref="tli:Tlie_0851" gene 1051..1641 /locus_tag="S_scaffold_2387_2" CDS 1051..1641 /product="RNA 2',3'-cyclic phosphodiesterase {ECO:0000256 |HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=580340 species="Ba" /codon_start=1 /transl_table=11 /translation="VELVRCFVSVELDEKVRNRISQWIEELKILAPRLKWVSGSGLHI TLKFCGEIDLSKVIKLENALQDAFARTTVRPFGLEIGGVGAFPGLREPRVLWLGVGGE EDQLSRIVEIVESAAEIVGLEREHRPFHPHVTIARIKSPSDVPVDLIRTISEHELGQL SWNVNAVMLMRSDLRPSGAVYSPIAKYNLKQPEVSR*" /db_xref="tli:Tlie_0852" gene 1641..2765 /locus_tag="S_scaffold_2387_3" CDS 1641..2765 /product="recombinase A" /codon_start=1 /transl_table=11 /translation="VAKSKQKQEITREDVLDLALRDIKSKFGEGAIMCLGEERTSSVE VIPTGVLSLDLALGIGGYPRGRIVEIFGPEGSGKTTLALHAIAEAQKAGGIAAFIDAE HALDPRLAAAMGVKVDSLYVSQPDSGEQALYILETLVRSSAVDVIVVDSVAALTPQAE IDGRIGDSQVGLQARLMSYALRRLTSAISKSKCVVIFINQLRAKISTMGYGGPQETTT GGRALKFYSSVRIEVKRGKALTKGDENIGHELWIKVVKNKQAPPFKSAHASLIYGRGI PEEMSVLDMALDMDIVTKRGSWLSYEGETLGQGKDNVAAYIKNNPELMAEITRKVKEK IAESGGFLIAPHEEEQEEPVAMEEMDIEEGILELDVEEDN*" /db_xref="tli:Tlie_0853" ORIGIN 1 CATGGCTGGG AAAAGTGGAT CTCATCGTAC TTTCGGGAGG CTTGGGCCCC ACTCACGATG 61 ACGTGACCAG GGAGGCTGTT TCAAGGCTTT TGGGTCGACC TCTTGTGCTC AGGGAGGACC 121 TGTATGCCTC CATCCTTGCC AGGTACGCCG GCCCAATAAA GGAAGCCGTG GAAAGATCGA 181 AGCACAAACA GGCGTTGATC CCGGAAGGAG CAGAGGGAAT ATATAACCCC CTAGGATCCG 241 CTTTGGCTTT CAAGGTGAAC TTGATGGATA CAGAGATCTT TGTTTTGCCT GGGGTTCCCA 301 GGGAATTTAA GGCCATCGCC GAGGAAAGGG TGCTTCCAGC GCTTGATAAG GGAGGTAAAG 361 TGAGAGAGGT CATAAGGGTC GTTGGTTGGC CTGAAAGTAT TTTAAAGGAC AAACTGAAAG 421 GCCTTTTGGA GGAATTCAAG GAAGTGAAGT TGTCCATTTT GCCCTCTCCC AACTTGATTA 481 AGTTGTCCTT ATGGGGTACC CCTGGGGATG TCTATAACGC GGCAAACTAC GTAAGGGACC 541 TGTTGTCTGA GGATATACTC CCTCAAGGGG CCTCCAGCCT GGCGGAGGCA GTCTTGCTTG 601 AGGCAGAAAA GAAACAAGCC CCCGTGGCCC TTGCTGAATC GTGTACAGGG GGACTTTTGG 661 GGGCTTCTTT AACCCAGATT CCAGGGGCCT CAAAGGTCTT TCTGGGGGGT GTGGTTTGTT 721 ACAGCAATGA ATCAAAGATA AGGATCCTGA AAGTCCCAGA GAAGGTAATA AGGGATCATG 781 GGGCCGTCAG CCCTGAATGT GCCGAGGCGA TGGCGTTAGG AGCCAAGGAA CTTTTGGGTT 841 CTGATTTTGC TCTTTCCGTT ACTGGTATAG CTGGACCCGA TGGAGGTACA GAAGAAAAAC 901 CCGTCGGTAC GGTGTGTTTT GCTATATCCA GCCCAAAGGG CTTGGAGACT TTTCAACGGC 961 AATTTTTTGG CGATCGCTCT AACATAAGGG ATTGGGCTGT CGCGTTTGGT CTTGAGAAAC 1021 TTTGGAGAGC CATTAAGGGG GGATGCGAAG GTGGAGCTCG TTAGGTGTTT TGTGTCTGTG 1081 GAGCTGGATG AGAAGGTTAG AAATAGAATC AGTCAATGGA TTGAGGAGCT CAAAATATTG 1141 GCCCCCAGAC TTAAATGGGT TTCTGGCTCT GGATTACACA TAACCTTGAA GTTTTGTGGC 1201 GAGATAGATT TGAGCAAGGT AATCAAACTT GAAAACGCCC TTCAGGATGC CTTTGCAAGG 1261 ACTACAGTCC GACCTTTTGG TCTAGAGATA GGAGGCGTTG GAGCCTTTCC TGGTCTTAGG 1321 GAGCCCCGTG TTCTTTGGTT AGGTGTGGGA GGGGAAGAGG ATCAGCTTTC CAGGATCGTA 1381 GAAATAGTGG AGAGTGCAGC GGAGATCGTT GGGTTGGAGA GAGAGCACCG TCCTTTTCAT 1441 CCCCACGTAA CCATAGCCAG GATAAAGTCT CCATCCGATG TGCCAGTGGA TCTTATAAGG 1501 ACCATAAGCG AGCATGAGTT GGGGCAGCTG TCGTGGAACG TAAATGCAGT AATGCTTATG 1561 AGAAGCGATC TTAGACCTTC TGGCGCCGTG TATAGCCCCA TAGCCAAGTA TAATTTGAAG 1621 CAACCGGAGG TGAGCCGTTA GTGGCCAAAT CGAAACAGAA ACAAGAGATA ACTCGAGAGG 1681 ACGTACTTGA TTTAGCGCTC CGGGACATTA AAAGCAAGTT CGGAGAAGGA GCCATAATGT 1741 GCCTTGGTGA GGAGAGGACC TCAAGCGTGG AGGTGATCCC GACGGGGGTT TTATCCTTGG 1801 ACCTTGCATT GGGAATAGGA GGATACCCGC GGGGAAGGAT AGTTGAGATT TTTGGTCCTG 1861 AAGGAAGTGG CAAGACCACG CTGGCTTTGC ATGCCATAGC GGAAGCCCAG AAGGCTGGTG 1921 GCATTGCAGC GTTCATTGAT GCTGAGCATG CTCTTGATCC TCGCCTGGCG GCTGCCATGG 1981 GAGTAAAGGT AGATTCCCTC TACGTTTCTC AGCCTGATAG TGGTGAGCAG GCTCTGTATA 2041 TACTAGAGAC GTTGGTAAGA AGCAGTGCTG TGGACGTCAT CGTGGTGGAT TCCGTGGCGG 2101 CTCTTACCCC TCAAGCGGAG ATAGACGGCA GAATTGGGGA CAGCCAGGTT GGGCTTCAGG 2161 CCCGGCTCAT GTCCTATGCT TTGAGGCGCC TTACATCTGC GATATCCAAG AGCAAGTGCG 2221 TTGTTATATT TATAAACCAA CTCAGGGCCA AGATATCCAC TATGGGATAT GGCGGTCCTC 2281 AGGAGACCAC CACAGGAGGG CGTGCCCTCA AGTTTTATAG CTCGGTGCGG ATAGAAGTCA 2341 AAAGAGGGAA GGCCTTGACG AAAGGTGACG AGAATATAGG TCATGAGCTA TGGATAAAGG 2401 TGGTCAAGAA CAAGCAGGCG CCACCCTTTA AATCCGCCCA TGCCTCGCTG ATATATGGTA 2461 GGGGGATACC AGAGGAGATG TCTGTTTTGG ACATGGCACT GGATATGGAC ATCGTTACGA 2521 AGCGGGGTTC TTGGCTTTCC TATGAGGGAG AGACTCTGGG ACAAGGGAAG GATAACGTTG 2581 CTGCTTACAT AAAGAACAAC CCTGAACTTA TGGCGGAGAT AACCAGGAAG GTCAAGGAGA 2641 AAATAGCAGA AAGTGGAGGA TTTTTGATTG CTCCCCATGA GGAGGAGCAA GAGGAGCCTG 2701 TAGCAATGGA GGAAATGGAC ATAGAAGAAG GAATCCTAGA GCTAGACGTC GAGGAAGATA 2761 ATTAAATAAG TAGCCAAATA AACAGAGAAA TGGATAAATT ATACAATCGG CAGGCCAAGA 2821 GAAGAATCCC TGCCGATTGT GTTTATTGAG TGAGATAATA CGGCATTGCT TGCAACATAA 2881 AGACCATTAA TATGTTTATT GTAAGCAAAT AGCAACCCTT AGTGTAAGTT TTAAAAATAG 2941 TTCGTCTATT TGAAGGTGTT GACAGTTTCA AAGATGCCGG TTATTATTAC CTTCGCCTCG 3001 CGGGAACGGC CGCGGTGGAG GGGACCTTGA CAGTGGAATA TAGGCAGATA GGTGAGGGCT 3061 CTTGGAATTT TTTGGAGAGT TTGATCCTGG CTCAGGACGA ACGCTGGCGG CGTGCCTAAC 3121 ACATGCAAGT C //