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cn_combo_scaffold_389_13

Organism: CN-SCN_Acidobacteria_32xOld

near complete RP 52 / 55 MC: 3 BSCG 48 / 51 MC: 1 ASCG 12 / 38
Location: comp(15423..16346)

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator id=12557042 bin=CNBR_ACIDO species=Photobacterium damselae genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 308.0
  • Bit_score: 620
  • Evalue 8.00e-175
Putative HTH-type transcriptional regulator YpdC {ECO:0000313|EMBL:GAL08557.1}; TaxID=754436 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 35.4
  • Coverage: 288.0
  • Bit_score: 174
  • Evalue 2.10e-40
AraC family transcripitonal regulator similarity KEGG
DB: KEGG
  • Identity: 35.8
  • Coverage: 265.0
  • Bit_score: 170
  • Evalue 6.20e-40

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Taxonomy

Photobacterium aphoticum → Photobacterium → Vibrionales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 924
ATGTCAGTCAAACATACGACCGGCTTTCCGCCCGCCCGCGGCCGCGCACACGCCGGTCACCGGGTAGCCGGCGCGCTCGAGCACCTGCTCAGGACGCTGCGCATCCGGCACGTGCACGTGGCCGACGGCAGTGCGCCCCCACCGGCCCTAGCGTACGTCACGGCCTTCCCGCGGTTGTCGATTCCGATCGACGGCGCGCTCGCGGTCGAGTTCGCGCATCGGGGCCGCAGCGAGAAGGTCACCGCCGAACGCGGCCACGCCGTGCTCGTTCCCGCGCACGCCTGGGATCGGCCGCAGTGGTCGCCGGAGACGACCACGCTGACGTGCATGTTCGGCCATCGCCAGACGGGTTTCAGTCTCGTGAAGCAGGCTGTGACCGGCGCGCCTCCGGAGGTAGTCAAGACGAGCGTGCATGGCGCACACGACGGCGTGAGCCGCAGCATTCTTCAGGCGCTGATGGCAAGCGCCATGGATGGTTCCGGCGGCCGTCTCCCCCCGCTTCTGGTGGAGAGTCTGCTGCACGCCTGTGTGCGGCTGCTCAAACACGTCGAGCCGCCGCCGCTCCGCAAGGCCACGCTGACCTACGAGGCACTCTGCCTCTACGTGGCCGAACATTTCATGGACCGCGAGCTGAATCGCGAGTCGGTGGCGTCCGTCTTCGGGCTCGCGCCGAACTACATCTCCCGCCTCTTCACCCGGGAAGGCTCCCGCCACTTCAACGACTACCTCAACATCGTCCGGGTCAACCAGGCGAAGTTCATGCTGCGCAACTACCGAAGCAGCCTGAAAGAGGTCGCCGCCAATTCGGGCTACAGCGACGCCACGTACTTCTGCCGGGTGTTCCGCAAGGTGACCGGCATGACGCCGATGCAGTACCGCACGGGGCTTGCCGTCGAGGATTCGCGGATCGGCGTCGTGCCGTAG
PROTEIN sequence
Length: 308
MSVKHTTGFPPARGRAHAGHRVAGALEHLLRTLRIRHVHVADGSAPPPALAYVTAFPRLSIPIDGALAVEFAHRGRSEKVTAERGHAVLVPAHAWDRPQWSPETTTLTCMFGHRQTGFSLVKQAVTGAPPEVVKTSVHGAHDGVSRSILQALMASAMDGSGGRLPPLLVESLLHACVRLLKHVEPPPLRKATLTYEALCLYVAEHFMDRELNRESVASVFGLAPNYISRLFTREGSRHFNDYLNIVRVNQAKFMLRNYRSSLKEVAANSGYSDATYFCRVFRKVTGMTPMQYRTGLAVEDSRIGVVP*