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BSR_Lac_UAPBR_inlet_p_23292_1

Organism: BSR_Lac_UAPBR_inlet_p_Ochrobactrum_anthropi_56_5

near complete RP 41 / 55 MC: 5 BSCG 43 / 51 MC: 8 ASCG 14 / 38 MC: 6
Location: 3..410

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039FBC20 similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 135.0
  • Bit_score: 248
  • Evalue 2.10e-63
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.2
  • Coverage: 133.0
  • Bit_score: 182
  • Evalue 2.60e-43
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 67.0
  • Coverage: 115.0
  • Bit_score: 152
  • Evalue 7.60e-35

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
CGCCTGAAGCGCACAGCTGTCACATATCCCGCGCCAGCAGCGGGACACATGGATGCAGAGATTATTCCCTTTCCGCTTTCCCATTCCACCACTGCCGATCCGGAGCGTATCATGGCGCAGCGCCAGCTTCTCACTCTCGTCGAGGAAGCCACTGATGCGCTTCCTGAAAGCTTCCGCCTTGTCTTCGTCGCCCGCGTGATTGAAGGGCTGAGTGCTGAAGAAACAGCTGCGGCACTCAATATTCCGGTCGCCACGGTCAAGACCCGCCTGCACCGTGCCAGAAAACTCATCCGTACACGGCTTGAACAACAGATCGGACCGATATTGATCAACGCTTTCCCATTTGCTGGTATGCGCTGCGCCCGACTGACTGAAACCGTGATTATAAAACTAGGTCTCGAAAAATAA
PROTEIN sequence
Length: 136
RLKRTAVTYPAPAAGHMDAEIIPFPLSHSTTADPERIMAQRQLLTLVEEATDALPESFRLVFVARVIEGLSAEETAAALNIPVATVKTRLHRARKLIRTRLEQQIGPILINAFPFAGMRCARLTETVIIKLGLEK*