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SCN18_25_1_16_R1_B_scaffold_1907_4

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: comp(4740..4943)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase omega subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 97.0
  • Coverage: 67.0
  • Bit_score: 132
  • Evalue 4.10e-29
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.0
  • Coverage: 67.0
  • Bit_score: 132
  • Evalue 2.00e-28
DNA-directed RNA polymerase subunit omega n=11 Tax=Bordetella RepID=RPOZ_BORA1 similarity UNIREF
DB: UNIREF100
  • Identity: 83.6
  • Coverage: 67.0
  • Bit_score: 114
  • Evalue 2.40e-23

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCCCGCATCACCGTAGAAGACTGCCTCGAGCAAGTGCCCAACCGCTTCGACCTGACCCTGGTCGCGACCTATCGCGCCCGCGAACTGGCCCAGGGTCACGAGCCCCGCATCCAGAGCCACGACAAGCCCACGGTCACCGCGCTGCGTGAAATCGCCCAGGGCCTGGTCGGCACCGAGATGCTGCGCAAAGTCCCCACCTGA
PROTEIN sequence
Length: 68
MARITVEDCLEQVPNRFDLTLVATYRARELAQGHEPRIQSHDKPTVTALREIAQGLVGTEMLRKVPT*