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SCN18_25_1_16_R1_B_scaffold_1989_2

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: 255..938

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V409_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 71.9
  • Coverage: 203.0
  • Bit_score: 300
  • Evalue 1.30e-78
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 71.9
  • Coverage: 203.0
  • Bit_score: 300
  • Evalue 3.80e-79
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21248.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.9
  • Coverage: 203.0
  • Bit_score: 300
  • Evalue 1.90e-78

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 684
ATGACACAGAAACCGAACACGCGGCAGGCGCCCGTCTCGCGCGACACGGACCGCTCCCAGGCGGCGATCCTGAAAGCCGCCCGCGACGAATTCACCGAACACGGATTCGCGGGAGGGCGGGTGGACCGCATCGCGGTGCGCGCGGGCGTGAACAAGCGCCTGATCTACTATTACTTCGGCAACAAGGACGAGCTCTTCCTCTCCGTCCTGGAACACACTTACGCCGACATTCGCCAGGCCGAGCAGGGCCTGCATCTCGATGCGCTCGAACCGGTCGAGGCCCTGCGCACGCTCGTGCGCTTCACGTGGCGCTACTTCCTGGATCATCCGGAATTCCTCTCCCTGCTGGCCAGCGAGAACCTCTCGCGCGCCAGCCACCTGAAGCAATCGGGCAAGATCCGCGAGATGCATTCGCCACTGGTGCAACTGCTCGACCGGCTGCTCGAGCGCGGCCGGGCCCAGGGCCTGTTCCGCGCCGGGATCGACCCCGTCCAGCTCTATATCTCCATCGCTTCCCTCGGCTTTTTCTACCTGGCCAACAACCACACCCTGTCGGTGATCTTCGGGCGCGACCTGCGCGCGGCCGAAGCCCTCGACGAGCGCCTGGCCCACATGACGGATCTGGTCGTCGGCTACGCGTCCAGCCCGACGGACGCCGGCCGGGCGCGGCAGAAAACCTCCTAG
PROTEIN sequence
Length: 228
MTQKPNTRQAPVSRDTDRSQAAILKAARDEFTEHGFAGGRVDRIAVRAGVNKRLIYYYFGNKDELFLSVLEHTYADIRQAEQGLHLDALEPVEALRTLVRFTWRYFLDHPEFLSLLASENLSRASHLKQSGKIREMHSPLVQLLDRLLERGRAQGLFRAGIDPVQLYISIASLGFFYLANNHTLSVIFGRDLRAAEALDERLAHMTDLVVGYASSPTDAGRARQKTS*