ggKbase home page

SCN18_25_1_16_R1_B_scaffold_2031_5

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: comp(2397..2999)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal large subunit pseudouridine synthase E (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 94.5
  • Coverage: 183.0
  • Bit_score: 355
  • Evalue 5.20e-96
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.5
  • Coverage: 183.0
  • Bit_score: 355
  • Evalue 2.60e-95
Pseudouridine synthase n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7IEY7_PSEPS similarity UNIREF
DB: UNIREF100
  • Identity: 84.6
  • Coverage: 175.0
  • Bit_score: 310
  • Evalue 6.70e-82

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 603
ATGAATTCCCGCCTGCTGCTGCTCAACAAGCCTTTCGGCGTGCTGACCCAGTTCAGCGACGACCAGGGCCGCGCCACGCTGAAGGACTTCGTCGACGTGCCCGGCGTCTACCCGGCCGGACGGCTGGACCGCGACAGCGAAGGCCTGCTCCTGCTGACCGACGACGGCCGCCTGCAGGCGCGCATCGCCGACCCCCGGCACAAGATGACGAAGACCTACTGGGTGCAGGTCGAAGGCGAGCCGGCCGAGGCCCAATTGCAACGCCTGCGGACCGGTGTGGACCTGAAGGACGGCCCCACCCTGCCCGCCCAGGCCCGCCTGCTGGCGGAACCGCGGCTCTGGCCGCGCGATCCGCCGGTGCGTTTCCGCAAAAGCATCCCGACCGCCTGGCTGGAAATCACCATCCGCGAAGGCCGCAACCGCCAGGTGCGGCGCATGACCGCGGCTGTGGGATTGCCGACCTTGCGCCTGGTGCGAATCGGCATCGGGCCCTGGCGCCTGGAAGATCTGCCGCCCGGCGCATGGCGCGAGGTCGATCCGCCACCCGGCACCAGCGCCCCGATGGCGGGCGCCCTTTGGGCCAAGGCGCCATTCCGTCTATGA
PROTEIN sequence
Length: 201
MNSRLLLLNKPFGVLTQFSDDQGRATLKDFVDVPGVYPAGRLDRDSEGLLLLTDDGRLQARIADPRHKMTKTYWVQVEGEPAEAQLQRLRTGVDLKDGPTLPAQARLLAEPRLWPRDPPVRFRKSIPTAWLEITIREGRNRQVRRMTAAVGLPTLRLVRIGIGPWRLEDLPPGAWREVDPPPGTSAPMAGALWAKAPFRL*