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SCN18_25_1_16_R1_B_scaffold_3172_5

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: 3465..4307

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.1
  • Coverage: 281.0
  • Bit_score: 551
  • Evalue 5.80e-154
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INY8_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 274.0
  • Bit_score: 400
  • Evalue 9.10e-109
23S rRNA (Uracil-5-)-methyltransferase RumA similarity KEGG
DB: KEGG
  • Identity: 96.1
  • Coverage: 281.0
  • Bit_score: 551
  • Evalue 1.20e-154

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 843
ATGGTTGAACCCATCCTGTTGTCCCTGGACGTCGAGTCGCTGGATCTCGAAGGCCAGGGCATCGCCCACCACGAGGGCAAGGTCGTCTTCATCGAGGGCGCGCTGCCCGGCGAGCGGGTCCTGGCCCGCGTGACGCGGCGCAAGCCGTCCTTCGACAAGGCCAAGGTCGAACGCGTCCTGCGGCCTTCCTCGCAGCGCACCCGGCCGCCGTGCCCGCATTTCGGTGTCTGCGGAGGCTGCGCCATGCAGCACCTGGAGCCGGCCGCGCAGATGGCCGTCAAGCAGCGCGCCCTGGAGGACGCCTTGGCGCACATCGGCAAGGTCCGGCCGGGGCAGATCCTGCCGGCGCTGCAGGGGCCCACCTTCGGCTACCGCCATCGCGCCCGCCTGTCCGTGCGGCTGGTGCCGAAGAAAGGCGGCATGCTGGTGGGATTCCGCGAGCGCGCCAGCAGCTACGTGGCCGACATGCAGTCCTGCCTGGTGCTGCCGCCGCACGTGTCGGCCCTGCTGATGCCGCTGCGCGAACTGGTCGGCGGCCTGTCGCGGCCCGACCGCGTGCCGCAGATCGAGGTGGCCGTGGGCGACGAATCCACGGTCTTCTGCCTGCGGCATCTGGAACCCCTGACGCCGGCCGACCTGGACCGCCTGCGCGATTTCGGCGCCCGGCACCGCATCGACTGGTGGCTGCAACCCAAGGGGCCGGAGACGGCCCATCCCCTGGATCCGGCCCGCGCCGACACGCTCGCCTACGCGCTGCCGGCCTACGGCCTGCGCATGCACTACCGGCCGACCGATTTCACCCAGGTCAACCCGCACATCAACCAGGCCCTGGTGGCCCGCGCG
PROTEIN sequence
Length: 281
MVEPILLSLDVESLDLEGQGIAHHEGKVVFIEGALPGERVLARVTRRKPSFDKAKVERVLRPSSQRTRPPCPHFGVCGGCAMQHLEPAAQMAVKQRALEDALAHIGKVRPGQILPALQGPTFGYRHRARLSVRLVPKKGGMLVGFRERASSYVADMQSCLVLPPHVSALLMPLRELVGGLSRPDRVPQIEVAVGDESTVFCLRHLEPLTPADLDRLRDFGARHRIDWWLQPKGPETAHPLDPARADTLAYALPAYGLRMHYRPTDFTQVNPHINQALVARA