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SCN18_25_1_16_R1_B_scaffold_2180_3

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: 4523..6067

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 515.0
  • Bit_score: 1016
  • Evalue 2.40e-294
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:CDM22633.1};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 515.0
  • Bit_score: 1016
  • Evalue 1.20e-293
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EB7C0B similarity UNIREF
DB: UNIREF100
  • Identity: 96.9
  • Coverage: 515.0
  • Bit_score: 997
  • Evalue 4.00e-288

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1545
ATGAAAGCGCTACTCGATCTCTTCAAGCAAGTCTCCCAGGACGAGCAATTCGACGCCATCCGCATCGGGATCGCATCGCCGGAAAAGATCCGTTCGTGGTCCTTCGGCGAAGTCCGCAAGCCCGAGACCATCAACTACCGCACCTTCAAGCCCGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCGATCAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCCTGAAGCACCGCGGCGTGATCTGCGAGAAGTGCGGCGTCGAAGTCACCGTGGCCAAGGTGCGCCGCGAGCGCATGGGCCACATCGAGCTGGCCAGCCCGGTGGCGCACATCTGGTTCCTGAAGTCCCTGCCCTCGCGCCTGGGCATGGTGCTCGACATGACGCTGCGCGACATCGAGCGCGTGCTCTACTTCGAGGCCTGGTGCGTGATCGAGCCGGGCATGACGCCGCTCAAGCGCGGCCAGATCATGTCCGACGACGACTACCTGGCCAAGACCGAGGAATACGGCGACGACTTCCACGCCCTGATGGGCGCAGAGGCCGTGCGTGAGCTGCTGCGCAACATCGACATCGACTCCGAGGTCGAAAAGCTGCGCGCCGAACTGAAGGCCACCGGTTCCGACGCCAAGATCAAGAAAATCTCCAAGCGCCTGAAGGTCCTGGAAGGCTTCCAGAAGTCCGGCATCAAGCCCGACTGGATGATCATGGAAGTGCTGCCGGTGCTGCCGCCGGACCTGCGTCCGCTGGTGCCGCTGGACGGCGGGCGCTTCGCCACGTCCGACCTGAACGACCTGTACCGCCGCGTCATCAACCGCAACAACCGCCTCAAGCGCCTGCTGGAACTGAAGGCCCCGGACATCATCCTGCGCAACGAAAAGCGCATGCTGCAGGAAGCCGTCGATTCGCTGCTGGACAACGGCCGCCGCGGCAAGGCCATGACCGGCGCCAACAAGCGCCAGCTCAAGTCCCTGGCCGACATGATCAAGGGCAAGAGCGGCCGCTTCCGCCAGAACCTGCTGGGCAAGCGCGTCGACTACTCCGGCCGTTCCGTGATCGTGGTGGGCCCGCAGCTGCGCCTGCACCAGTGCGGCCTGCCCAAGCTGATGGCGCTGGAACTGTTCAAGCCCTTCATCTTCAACCGCCTGGAAATGATGGGTCTGGCGACCACCATCAAGGCGGCCAAGAAGCTGGTCGAGAGCCAGGAACCGGTGGTCTGGGACATCCTCGAAGAGGTCATCCGCGAACACCCGGTGATGCTCAACCGCGCCCCCACGCTGCACCGCCTGGGCATCCAGGCCTTCGAACCGCAACTGATCGAAGGCAAGGCCATCCAGCTGCACCCGCTGGTCTGCGCGGCGTTCAACGCCGACTTCGACGGCGACCAGATGGCCGTGCACGTGCCCCTGTCGCTGGAAGCCCAGCTGGAAGCCCGCACCCTGATGCTGGCTTCCAACAACGTCCGGTGCCCGGGCAACGGCGAACCCGCCATCGTGCCGTCCCAGGACATCGTGCTGGGCCTGTACTACGCCACGCGC
PROTEIN sequence
Length: 515
MKALLDLFKQVSQDEQFDAIRIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDYLAKTEEYGDDFHALMGAEAVRELLRNIDIDSEVEKLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMIMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQLRLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARTLMLASNNVRCPGNGEPAIVPSQDIVLGLYYATR