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SCN18_25_1_16_R1_B_scaffold_4920_2

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: 451..1050

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXI1_PUSST similarity UNIREF
DB: UNIREF100
  • Identity: 76.9
  • Coverage: 199.0
  • Bit_score: 311
  • Evalue 3.90e-82
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 97.5
  • Coverage: 199.0
  • Bit_score: 383
  • Evalue 3.00e-104
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.5
  • Coverage: 199.0
  • Bit_score: 383
  • Evalue 1.50e-103

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGAGTGAGCGCGAGGTCGATCTCGCGCTGGTCGAGCGCGTCAGGCGCGGCGAGCGCCACGCCTTCGACCTGCTGGTGATCAAATACCAGCGCAAGATCATGCGGCTGCTGTCGCGCATGATCCACGACCCCGCCGAGATCGAGGACGTCGCCCAGGAAGCGTTCATCAAGGCCTATCGCGCCCTGCCCCAGTTCCGGGGCGAGAGCGCCTTCTACACCTGGCTCTACCGCATCGCCCTGAACACCGCCCGCAACTGGCAGGCGGCCAGCTTTCGCCGCCCCGCCACCGTGACGCCCCTGGAAAACGAGGACGGTGAAACTTTTGACCAGATCGATGGCCTAAGTGATCACAGCACCCCCGAATCGCTGATGGCCAGCCGGCAGGTCGCCCAGGCCGTCAACGAGGCCATCGACGAACTGCCGGACGATCTGCGCGCCGCGATCGTGCTGCGGGAAATCGAAGGGATGAGTTATGAAGAGATCGCCAGCACCATGCAATGTCCCATCGGCACCGTCCGTTCGCGCATCTACCGCGCCCGCGAGGCCATCGCGGCCCGCCTGCGGCCGGTCATGGAGCACGATTCGGAACGCCGCTGGTAA
PROTEIN sequence
Length: 200
MSEREVDLALVERVRRGERHAFDLLVIKYQRKIMRLLSRMIHDPAEIEDVAQEAFIKAYRALPQFRGESAFYTWLYRIALNTARNWQAASFRRPATVTPLENEDGETFDQIDGLSDHSTPESLMASRQVAQAVNEAIDELPDDLRAAIVLREIEGMSYEEIASTMQCPIGTVRSRIYRAREAIAARLRPVMEHDSERRW*