ggKbase home page

SCN18_25_1_16_R1_B_scaffold_5664_2

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: 593..1570

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 325.0
  • Bit_score: 630
  • Evalue 1.30e-178
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.8
  • Coverage: 325.0
  • Bit_score: 630
  • Evalue 6.70e-178
Pseudouridine synthase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IIW7_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 66.9
  • Coverage: 323.0
  • Bit_score: 421
  • Evalue 7.50e-115

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 978
ATGCCGTACACGGATATCGCCACCGAAGACACCGGCCCCGACGCGCCCGAGGTGTTCCGCCTGCCGCCGGACATCCTGCCGGACCGGCTGGACAAGACGCTCGCCCGCCTGATGCCGCGGCATTCGCGCAGCCGCCTGCAGTCCTGGATCGAGGACGGCCACGTCGAGGTCGACGGCGCCGTGGGCAAGGTGCGCACCCGGGTGGGGCCCGGCGCCCTCATCCAGGTCTGGCCCCAGCAGGCGCCCGAGGATCTGGCCTTCGTGCCCGAAGACGTCGCCTTCCGCGTCGTGGACGATTCCCCGGACTGGATCGTGGTGGACAAGCCCGCTGGACTGGTGACGCATCCGGGCGCGGGCAACTGGCACGGCACGCTGCTCAACGGCCTGCTGTTCCGCTATCCGGAACTGGCCCGCGTGGCCCGGGCCGGCATCGTCCACCGGCTGGACAAGGACACCTCGGGGCTGCTGGTCGTGGCCCGCACGGAGACCGCCCAGACGCAACTGGTGCGCCAGCTCCAGGCCCGCACGGTCAAGCGCGAATACTGCGCGCTGGTGCACGGCGCGCTGTCGGGGCGGGGCACGGTGGACGCGCCGATCGGCCGCGACGCCCGGGTTCCGGTCCGCATGAGCTCGGACCGTCCGGTGGCGCCCAAACCCGCCGTCACCCATTACGAGTCCCTGGGCGTCGGGCATTTCGGCGGGCTCGCCGTGTCCCGCGTGTTGTGCCGCCTGGAAACCGGCCGCACGCACCAGATCCGCGTCCACATGGCCCGCTTGAGGCATCCCCTGCTGGGCGACACCCTGTATGGCGGGCGGCTGGAGGCCGGCGCCGGCCGGCAGATGCTGCACGCGCGCGCGCTGGGCTTCGACGATCCCGTCACCGGACGGCCCTGCGCCTTCACGGCGGAGCCGCCGGACGATTTCCGCCGCGTGCTCGACGGCATACTCTGGGAAGGCGATGGCGACGACCGTGCTTGA
PROTEIN sequence
Length: 326
MPYTDIATEDTGPDAPEVFRLPPDILPDRLDKTLARLMPRHSRSRLQSWIEDGHVEVDGAVGKVRTRVGPGALIQVWPQQAPEDLAFVPEDVAFRVVDDSPDWIVVDKPAGLVTHPGAGNWHGTLLNGLLFRYPELARVARAGIVHRLDKDTSGLLVVARTETAQTQLVRQLQARTVKREYCALVHGALSGRGTVDAPIGRDARVPVRMSSDRPVAPKPAVTHYESLGVGHFGGLAVSRVLCRLETGRTHQIRVHMARLRHPLLGDTLYGGRLEAGAGRQMLHARALGFDDPVTGRPCAFTAEPPDDFRRVLDGILWEGDGDDRA*