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SCN18_25_1_16_R1_B_scaffold_9429_2

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: comp(1212..1790)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SXK3_META2 similarity UNIREF
DB: UNIREF100
  • Identity: 58.6
  • Coverage: 186.0
  • Bit_score: 219
  • Evalue 1.50e-54
RND efflux membrane protein similarity KEGG
DB: KEGG
  • Identity: 86.5
  • Coverage: 192.0
  • Bit_score: 336
  • Evalue 3.10e-90
RND efflux membrane protein {ECO:0000313|EMBL:CDM25030.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 192.0
  • Bit_score: 336
  • Evalue 1.50e-89

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Taxonomy

Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80 → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATCGACGGCTTCGTCCTCACGCGCGACGCGGACCCGGGCACGACCCTGATGGCCGGGCAGGCCGTCGTCCAGGTGATCGCGCCCGGCACGCTCTGGATCGACGCGCGCTTCGATCAGGCCGGCTCCGCCGGCTTGTCGGAAGGCCTGGCGGTCCGGATCGTGCTGCGGTCCCGCGGGCTGGAGCCGGTCGAGGGCCGGGTCGCCCGCGTCGAACCGGTCGCCGACGCCATTACCGAGGAACTGCTGGCCAAGATCGCCTTCGACACCCCGCCCGCGCCGCCGCCCGCCCTGGGCGAACTGGCCGAAACCACGGTGGAACTGCCGGCCACCCCGCCGGGCCCCGTGATTCCGAACGCGGCCATCCACCAACAGGACGGACGGCCCGGGGTCTGGCGCATCGAGGACGGCCGGCCGGTCTTCGCTCCCATCCGCGTCGGGGCCGCCGACGTCCGGGGCATGGTCCAGGTGCTGGACGGACTGCGCGCCGGCGACCTCGTCGTCGTCCACAGCGCCAGCCCGCTGACGGTCCGCAGCCGGATCCGCGCCACCGGTCCGGCACCGCAAGGGCCCGCCGCATGA
PROTEIN sequence
Length: 193
IDGFVLTRDADPGTTLMAGQAVVQVIAPGTLWIDARFDQAGSAGLSEGLAVRIVLRSRGLEPVEGRVARVEPVADAITEELLAKIAFDTPPAPPPALGELAETTVELPATPPGPVIPNAAIHQQDGRPGVWRIEDGRPVFAPIRVGAADVRGMVQVLDGLRAGDLVVVHSASPLTVRSRIRATGPAPQGPAA*