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SCN18_25_1_16_R1_B_scaffold_1142_6

Organism: SCN18_25_1_16_R1_B_SCNPILOT_EXPT_750_BF_Burkholderiales_68_35_70_17

near complete RP 47 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 5622..6296

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Polaromonas sp. CF318 RepID=J3CWP6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 51.3
  • Coverage: 197.0
  • Bit_score: 183
  • Evalue 1.40e-43
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL79791.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.3
  • Coverage: 197.0
  • Bit_score: 183
  • Evalue 1.90e-43
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 50.5
  • Coverage: 198.0
  • Bit_score: 179
  • Evalue 5.70e-43

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Taxonomy

SCNPILOT_EXPT_750_BF_Burkholderiales_68_35 → SCNPILOT_EXPT_750_BF_Burkholderiales_68_35 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
ATGAATGCGTCGACGACCGGATGGCGGCCCGGCCCGGTGCCGGGCGCCATCGCCCCCGCGCGTCGCGCACAATCACGCCCCATGGAGTCGAGCGGCCCGCCCTCTGGCGACGAGGAACTGATGCTCGCGTTCGGGCGCGGCGACGTACGCGCTTTCGAGATGCTCTACGATCGCCACGAGCGCGGGCTGTTCCGCTTCATCGTCCGCTGCGTCGGACGGCAGGCGGGCAACGGCGTGGCCGAGGAACTGTTCCAGGACACCTGGTTCGCGGTCACGCGCGAGGCGGCGCGCTACCGGCCCCAGGCGCGATTCGCCACCTGGCTGTACACCATCGCGCGCAGCCGGGTCGTCGACTACGTGCGGCGCAGCCGCTCGCGCGGCGGCACGCCGGCATCGATCGACGACGAAGCGCACGCCGATCTGGCCCAGGCGCTGGCGGCCGACGCGCGCGGCGAGCCGCTGGCGAGGGTGGAGGACCGCGCCCGGGCGACGGCCTTCATGGCAGCCGTCGACGCGCTGCCGGACGAGCAGCGCGCGGCCTTCCTGCTGCAGGTGGAGGCCGGCCTGAGCGTGGAGGAGATCGGCGCGGCGACCGGCGTGGGCGCGGAAACCGCCAAGAGCCGGCTGCGCTACGCGCGCGCGAAACTGCGCCAGGCGCTCGCGCACTGGCGCTGA
PROTEIN sequence
Length: 225
MNASTTGWRPGPVPGAIAPARRAQSRPMESSGPPSGDEELMLAFGRGDVRAFEMLYDRHERGLFRFIVRCVGRQAGNGVAEELFQDTWFAVTREAARYRPQARFATWLYTIARSRVVDYVRRSRSRGGTPASIDDEAHADLAQALAADARGEPLARVEDRARATAFMAAVDALPDEQRAAFLLQVEAGLSVEEIGAATGVGAETAKSRLRYARAKLRQALAHWR*