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SCN18_25_1_16_R1_B_scaffold_201_24

Organism: SCN18_25_1_16_R1_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47_62_13

near complete RP 50 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 3
Location: 46030..47274

Top 3 Functional Annotations

Value Algorithm Source
hemolysin secretion protein D n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000344D537 similarity UNIREF
DB: UNIREF100
  • Identity: 71.7
  • Coverage: 413.0
  • Bit_score: 577
  • Evalue 8.00e-162
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 401.0
  • Bit_score: 571
  • Evalue 1.20e-160
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACF00533.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.8
  • Coverage: 401.0
  • Bit_score: 571
  • Evalue 6.10e-160

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Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1245
ATGTCAGGTTTCGCAAAGTCTTTTCAAAGACTTGGCCAGCATAGACGAGCCCTGTGGGGCATCGTCGCGGTGGTTGTGGCGGGCGGTGTTGCTGCCGTCATCCTGCGCAGCGGTGCGGAGCCGCGCGGCGGTTTGGAGATGTCCAGCCAGTCGCGCCGCAGCGGGCCGCGCTATATTCCAAGTCAGGCCGAGTGGGCTGCCCTCACGGTAGCGCCGGTATCCGACTATACGTTTCGGACCGAACGTATCACCGAGGGCAAGATCGCGGTCGATGAGGATCGCGCCACGCCGGTATTTTCGCCCTATGCCGGCCGGGTGATCAAGCTGCTGGCGCGGCCCGGCGATCATGTCGCGCAAGGCCAGCCGCTGTTCGTCATCGAAGCCGCCGATACCGTGCAGGCCCAGAACGATTTTATTGCCGCGGCTGCGGGCCTCAACAAGGCGAAATCGCAGCTCGAACTGGCGAAGATTCAGAACACCCGCGCCCGCGACCTGTTCGACGGCAAGGCCATTCCACTGAAGGATTTCCAGCAGGCGCAGGCGACGCTGGTGTCGGCCGAGAATGACCAGCGCGCGGCGCAGACCGCGCTGGAGGCCGTGCGTAACCGACTACGCATCCTCGGTCTCAGCGAGCAAGCCATTGCGGACTTCCAGCAGAAGGGCCGGATCGATCCCGAAACCACCATCGTTGCGCCGATCGCGGGCACCGTGGTCCAGCGCAAGATCGGTCCCGGCCAGTACATCAACGCCGGCGCCAGCGATCCGGTGTTCGTAATCGGCGATCTCTCCACGGTCTGGCTCACCGCCTTCGTTCGCGAAAGCGATGCCGCGATGGTGACCGCCGGGCAAGAGATTGCCTTCAAGGTGCTGGCGCTGCCGGATCGCGATTTGCGCGCACGCATCGATTACGTCTCCGCCGCCATCGATCCTACGACCCGACGGCTGATGGTGCGCGCTACGGTGAATAACGCCGATGGCCTCCTGAAGCCGGAGATGTTTGCCAATGTCACAATTTTCGCCGCCGCCAATCACGCTGCGGTCGGTGTGCCGAAGCGGGCGTTGATCTACGAGGGCGACGAGGTCCGGGTCTGGGTGGTGCATGACGACAAGTCGATCGAATTGCGCAAGATCAAGACTGGCCTGACCAACGGCGATTTGGTGGAAGTGCTGGGCGATCTCCACGCCGGCGAGCGCATCGTCACCAAGGGCAATCTTTTCATCGACCGGGCAGCCTCGGGAAGCTGA
PROTEIN sequence
Length: 415
MSGFAKSFQRLGQHRRALWGIVAVVVAGGVAAVILRSGAEPRGGLEMSSQSRRSGPRYIPSQAEWAALTVAPVSDYTFRTERITEGKIAVDEDRATPVFSPYAGRVIKLLARPGDHVAQGQPLFVIEAADTVQAQNDFIAAAAGLNKAKSQLELAKIQNTRARDLFDGKAIPLKDFQQAQATLVSAENDQRAAQTALEAVRNRLRILGLSEQAIADFQQKGRIDPETTIVAPIAGTVVQRKIGPGQYINAGASDPVFVIGDLSTVWLTAFVRESDAAMVTAGQEIAFKVLALPDRDLRARIDYVSAAIDPTTRRLMVRATVNNADGLLKPEMFANVTIFAAANHAAVGVPKRALIYEGDEVRVWVVHDDKSIELRKIKTGLTNGDLVEVLGDLHAGERIVTKGNLFIDRAASGS*