ggKbase home page

SCN18_25_1_16_R1_B_scaffold_484_5

Organism: SCN18_25_1_16_R1_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47_62_13

near complete RP 50 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 3
Location: comp(4607..5716)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 374.0
  • Bit_score: 591
  • Evalue 6.70e-166
tRNA pseudouridine synthase B n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGU3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 87.5
  • Coverage: 335.0
  • Bit_score: 585
  • Evalue 3.40e-164
tRNA pseudouridine synthase B similarity KEGG
DB: KEGG
  • Identity: 80.7
  • Coverage: 368.0
  • Bit_score: 582
  • Evalue 4.80e-164

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1110
ATGACAGTGACCTCGCCAAACGACGCCGTCGCCGCCAATAACGCTGATTTTCATCAGGGCGCCGATAATAATTTCGGCCCCTCGCCGGAGCGGATGCGCGCCACCAACGATCCGCGCGCCGACAAGCCGCAGCGACAGGGCGGCCAGCAGAAACGCAACCGCCGCGACGTCCATGGCTGGATCGTACTGGATAAGCCGATCGGCATGACCTCGACGCAAGCGGTCGCGGTGATCAAGCGCCTGTTCAACGCCAAGCGTGCCGGCCATGCCGGCACCCTCGATCCGCTAGCCTCCGGCGGCTTGCCGGTTGCCCTCGGCGAGGCCACCAAGACGGTCCCCTTCGTGATGGACGGCCGCAAGCGCTACCGCTTCACGGTAACCTGGGGCGAGGAACGCGACACCGACGACACCGAGGGTCGCGTGACACACACCAGCGACGCTCGTCCCACCCCGGATGCCATCCAGGCGCTGCTGCCGCGCTTCACCGGCGTCATCGAGCAGATCCCGCCGCAATATTCAGCGATCAAGGTGCAGGGCGAGCGCGCCTACGATCTCGCACGCGACGGCGAGGTGGTGGAGCTGAAGCCCCGCCCGGTCGAAATTCACGAATTAGTCCTTGTCGAACAACCGGATAGCTCTCATTCGGTGTTCGAGGCCGAATGCGGCAAGGGCACTTATGTGCGGGCCCTGGCCCGCGACATCGGCCGCCTGCTCGGCTGCTACGGCCATATCAGCGCGCTGCGCCGCACCCTGGTCGGCCCGTTCGACGAGCAGGACATGATTCCGCTGGCGGAATTGGAGGCTTTGTGCGATAGAGCCGCGTCTGGCGAGGGTAGCCTCGCCGACGCGCTACTGCCCGTTGAGACCGCGCTGGACGACATCCCGGCACTGGCCGTCACGCGGGCGGATGCGGCAAGGCTCCATCGGGGCCAAGCCGTTTTGTTGCGCGGACGGGATGCGCCCAATTGCAGCGGCACAGTCTATGTCACAGTGGCAGGCCGGCTTTTGGCCCTCGCCGAGCTGGGCAATGGCGAACTCATCCCCAAGCGTGTCTTCAACCTGTCCGGGCTGACTGCCAGCGCCGGTCGCAACAACAACGAAAGAGTTTGA
PROTEIN sequence
Length: 370
MTVTSPNDAVAANNADFHQGADNNFGPSPERMRATNDPRADKPQRQGGQQKRNRRDVHGWIVLDKPIGMTSTQAVAVIKRLFNAKRAGHAGTLDPLASGGLPVALGEATKTVPFVMDGRKRYRFTVTWGEERDTDDTEGRVTHTSDARPTPDAIQALLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGEVVELKPRPVEIHELVLVEQPDSSHSVFEAECGKGTYVRALARDIGRLLGCYGHISALRRTLVGPFDEQDMIPLAELEALCDRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNCSGTVYVTVAGRLLALAELGNGELIPKRVFNLSGLTASAGRNNNERV*