ggKbase home page

SCN18_25_1_16_R1_B_scaffold_1181_10

Organism: SCN18_25_1_16_R1_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47_62_13

near complete RP 50 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 3
Location: 4967..5518

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Z80_RHOPB similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 182.0
  • Bit_score: 346
  • Evalue 1.30e-92
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 182.0
  • Bit_score: 346
  • Evalue 3.70e-93
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 182.0
  • Bit_score: 346
  • Evalue 1.90e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
ATGCCTCTCACAAATGAGCTTCGCGACGACATCTTGGCGTCGGTTCCGAGTTTGCGCGCTTTCGCAATTTCACTGAGCGGTAACGGCGACCGCGCCGATGACCTGGTGCAGGAGACGCTGTTGCGCGCGCTTGCCAACATCGACTCGTTTCAGCCGGGCTCCAATCTGCCGGCATGGTTGTTCACCATTCTGCGCAACCTGTTCCGCTCGGACTATCGCAAGCGGCGGCGCGAGGTCGAGGATGCCGAAGGCAACTATGCCAAGACGCTGAAATCGCAGCCGGGCCAGAACGCGCATCTCGAATTCGAGGAGTTTCGCGCCGCGCTCGACAAGCTACCGCAGGACCAGCGCGAAGCGCTTATCCTGGTCGGCGCCTCGGGCTTCTCCTACGAAGACGCCGCCGCGATCTGTGGCTGCGCCGTCGGCACCATCAAGAGCCGCGTCAACCGCGCGCGCACCAAGCTGAGCGCATTACTCTATGTCGATGGTGCCGAGGATTTCGGCCCGGATGACACCGTCCGCGCCGTGATCGGCGGCAGCGGCAACAGCTAG
PROTEIN sequence
Length: 184
MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPGQNAHLEFEEFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARTKLSALLYVDGAEDFGPDDTVRAVIGGSGNS*