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SCN18_25_1_16_R1_B_scaffold_1952_3

Organism: SCN18_25_1_16_R1_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47_62_13

near complete RP 50 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 3
Location: 1129..1650

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC69_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 74.0
  • Coverage: 173.0
  • Bit_score: 274
  • Evalue 6.00e-71
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.4
  • Coverage: 173.0
  • Bit_score: 274
  • Evalue 6.50e-71
rimM; 16S rRNA-processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 74.0
  • Coverage: 173.0
  • Bit_score: 270
  • Evalue 2.50e-70

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Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
ATGACAAAGCAGGTTTGCATCGCCCGCATCGGCGCCGCGCATGGCGTGCGCGGCGCGGTGAAGCTGTGGACCTTCACCGAAGACCCGTTCGCGGTTCTCGATTACGGACCGCTCTCGACCAAGGACGGCGCACGCCGGTTCGAAGTGAGCAACGCGCGCGAGGCCAAGGATCATCTGGTCGCAACGCTGCAAGGCGTCACCACGCGCAACGATGCTGAAAAACTCAACGGCGTCGAGTTGTATGTGCCGCGCGAAAAACTGCCGCCAGCCGAAGACGGCGAATACTATCATGTCGACCTGATCGATCTCGCCGCCGTTTCGATGGATGGCGCGCCGGTCGGCCGCGTCGTCGCGGTCCATAACTTCGGCGCCGGCGACGTCATCGAGATCGCGCCACCGAAAGGCGCGACGCTGCTGCTGCCGTTCACCGACGCCGTGGTGCCGACCGTCGACATCGCCGGCGGGCGGGTGGTGATCGAGATACCGGGCGAGGTCGACGGCGATACGCCCGATCAGGCATAA
PROTEIN sequence
Length: 174
MTKQVCIARIGAAHGVRGAVKLWTFTEDPFAVLDYGPLSTKDGARRFEVSNAREAKDHLVATLQGVTTRNDAEKLNGVELYVPREKLPPAEDGEYYHVDLIDLAAVSMDGAPVGRVVAVHNFGAGDVIEIAPPKGATLLLPFTDAVVPTVDIAGGRVVIEIPGEVDGDTPDQA*