ggKbase home page

SCN18_13_7_16_R1_B_scaffold_374_26

Organism: SCN18_13_7_16_R1_B_Terrimonas_44_11

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(40089..40667)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R6_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 38.5
  • Coverage: 192.0
  • Bit_score: 144
  • Evalue 1.00e-31
Uncharacterized protein {ECO:0000313|EMBL:KEQ30102.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 190.0
  • Bit_score: 184
  • Evalue 1.30e-43
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 38.5
  • Coverage: 192.0
  • Bit_score: 144
  • Evalue 3.00e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 579
ATGCTTGCTCATAATATCCATACTGAAACAGAACTGCTTGACTTACTGAAGGAGGGTAATACAGAAGCCTTCACTTCCATATACCAGTTGCACGCTCCTGCATTGACCGGTTTTGCCGCATCACGATTATCTTCTGTAGAAGAAGCGCGGGATATAATACATGATCTTTTTACTCATCTTTGGGATAGCAGGGAAACTCTTCAGATCAACGGTTCATTAAAGGCTTATCTTTTTGCAGCGGTACGTTATCGCATAATTGACCAGATAAGGAAGAATATTACCCGTAAAGAATACGCCGGGATGCTGGAACGTCTTTATGGGCACATGGTCGCTGACAGCGAAGCGGAAATCATTTCAAAAGATCTGCAGCATACGCTTGACCATGCCATAGAAGATCTTCCCAACAGAACGAAGGAAATATATAGGATGAGCCGCGACCGCCATCTTGCAATAAAAGAAATCGCATGCCAGCTCGGGCTTTCTGAACAAACGGTAAAAAACCAGCTCTCTATTGCACTTCACCATCTCAGGCATTCCTGGGAAAAGCTGGCTATTCTCATTATTCTTTTCCTGAACTGA
PROTEIN sequence
Length: 193
MLAHNIHTETELLDLLKEGNTEAFTSIYQLHAPALTGFAASRLSSVEEARDIIHDLFTHLWDSRETLQINGSLKAYLFAAVRYRIIDQIRKNITRKEYAGMLERLYGHMVADSEAEIISKDLQHTLDHAIEDLPNRTKEIYRMSRDRHLAIKEIACQLGLSEQTVKNQLSIALHHLRHSWEKLAILIILFLN*