ggKbase home page

SCN18_13_7_16_R1_B_scaffold_434_14

Organism: SCN18_13_7_16_R1_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_16

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 11867..12502

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A61A0A similarity UNIREF
DB: UNIREF100
  • Identity: 59.5
  • Coverage: 185.0
  • Bit_score: 209
  • Evalue 2.20e-51
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EGF96839.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.2
  • Coverage: 201.0
  • Bit_score: 203
  • Evalue 1.70e-49
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 54.8
  • Coverage: 197.0
  • Bit_score: 197
  • Evalue 3.20e-48

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 636
GTGCGGACCGAACCTCACGCACCTGCGTCGTCTGAACGGCCTGAAGGCCCAGGCGACTTCAAATCGGAACTGCTGTCGCTGATTCCGTTTCTGCGCGCATTTGCCCGTTCGCTGTGCGGCAATCCCGAAATGGCCGACGATCTGGCACAGGAAGCCCTCGTCCGTGCCTGGCAATCGCGCGACAGTTTCGTCCCCGGCACCAATCTGAAAGCCTGGCTGTTCACGATCCTGCGCAACCAGTTCTATTCCGATCGCAGGCGCGCCTGGCGGCAGGCGCCGTGGGATCAGGAATCGGCGGAGCGTATTCCCGGCAGTGCACAGGATCAGAACTGGGCCGCGGATCTGAGCGATACCGCGCGCGCCTTGCGCAGCCTGTCCGATGAACAGCGCGAGGCGCTGATCCTGGTCGGTGCCGGTGGCTTTTCTTATGAGGAGGCGGCGGCGATCTGCCATTGCGCCGTCGGCACGGTGAAAAGCCGCGTGGCGCGGGCGCGCCGGGCTCTGATCAATATTCTGGACGGAGATCGTTCGCTGCACGCGGTCAAGCGGCCTGGCAATGGTCAGGCCGCAAAAGAGATCATGGAGCAGCTCGACCGGTTGACACCGGATCATTCCTCCAAGGATGAGAAAGACTGA
PROTEIN sequence
Length: 212
VRTEPHAPASSERPEGPGDFKSELLSLIPFLRAFARSLCGNPEMADDLAQEALVRAWQSRDSFVPGTNLKAWLFTILRNQFYSDRRRAWRQAPWDQESAERIPGSAQDQNWAADLSDTARALRSLSDEQREALILVGAGGFSYEEAAAICHCAVGTVKSRVARARRALINILDGDRSLHAVKRPGNGQAAKEIMEQLDRLTPDHSSKDEKD*