ggKbase home page

SCN18_13_7_16_R1_B_scaffold_513_6

Organism: SCN18_13_7_16_R1_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_16

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(5222..5641)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease R RNase R protein {ECO:0000313|EMBL:ERL47229.1}; EC=3.1.-.- {ECO:0000313|EMBL:ERL47229.1};; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.8
  • Coverage: 137.0
  • Bit_score: 177
  • Evalue 8.70e-42
Ribonuclease R RNase R protein n=1 Tax=alpha proteobacterium RS24 RepID=U2WCG4_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 62.8
  • Coverage: 137.0
  • Bit_score: 177
  • Evalue 6.20e-42
histidine triad (HIT) protein similarity KEGG
DB: KEGG
  • Identity: 63.3
  • Coverage: 139.0
  • Bit_score: 173
  • Evalue 2.50e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 420
ATGACGTATGATTCCAACAATGTGTTTGCGAAGATTCTGCGCGGCGAAATTCCATCCGTGAAAGTGTATGAGGACGCGCATGTCCTCTCCTTCATGGATGTGATGCCGCAAGTGGAAGGCCACACCCTGGTCATTCCGAAAGAACCGGCCGTGGACATGCTGGACCTTTCACCGGAAGGGGCCGCCGAATTGATCAAGGCGACGCAGCGGATTGCGAAGGCGGTGAAAAAGGCGCTGGCCCCGCCGGGCATCATGCTGATGCAGCTGAACGGCGCCGCCGCCGGACAGAGCGTGTTTCACATTCATTTCCATATTCTGCCGCGGCACGCCGGAATCGACATGAAGCTGCATGCGCGCGAGATGGTGGACCCCAAAACGCTGGAACCGATCGCCGCGAAGATTCGCGCGGCGCTCGACTGA
PROTEIN sequence
Length: 140
MTYDSNNVFAKILRGEIPSVKVYEDAHVLSFMDVMPQVEGHTLVIPKEPAVDMLDLSPEGAAELIKATQRIAKAVKKALAPPGIMLMQLNGAAAGQSVFHIHFHILPRHAGIDMKLHAREMVDPKTLEPIAAKIRAALD*