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SCN18_13_7_16_R1_B_scaffold_610_28

Organism: SCN18_13_7_16_R1_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_16

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(29523..30068)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.6
  • Coverage: 181.0
  • Bit_score: 190
  • Evalue 1.30e-45
2''-5'' RNA ligase n=1 Tax=Rhizobium sp. CF080 RepID=J2RU63_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 52.5
  • Coverage: 177.0
  • Bit_score: 186
  • Evalue 1.30e-44
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 53.1
  • Coverage: 177.0
  • Bit_score: 186
  • Evalue 4.90e-45

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGATCCGTTTGTTCACCGCGCTTGAGCTTCCCGATTCCGTGGCACAAGGCCTTTCGCTGATTCAGGCCGGTGTTCCCGGCGCGCGCTGGCAATCGCGGGAGCAGCTGCACCTGACCTTGCGCTTTATCGGTGAGGTGGATGGGCGCGATGCCAACGCGATTGACGATGTGTTGTCGGGAATCAATGCGCCCGGTTTCATGCTGACGCTCAAAGGTGTGGGCGAATTCGGCGGAAAGAACCCCCGTGCCTTGTGGGCGGGTGTGGAGCCTTCGCCCGCTCTCACCCATCTGCAGCGCAAGATCGAAAGCGCTCTTCAACGCGCCGGCCTCCCGGCGGAGCCGCGCAAATACACCCCGCATGTCACACTGGCCCGTTTGCGCAATACGCCGCCGGGCGCGGTGATGGACTATCTCGCCGATCACGGCCTTTATGCCAGCGCGCCGTTCGCGGCTGGAAGCTTCACGTTGTTTTCCAGCGTGCTGTCCCAGAACGGCAGCATCTACCGGCAGGAACAGGTCTACCCCTTGCGTGGCGACGGCATCTAG
PROTEIN sequence
Length: 182
MIRLFTALELPDSVAQGLSLIQAGVPGARWQSREQLHLTLRFIGEVDGRDANAIDDVLSGINAPGFMLTLKGVGEFGGKNPRALWAGVEPSPALTHLQRKIESALQRAGLPAEPRKYTPHVTLARLRNTPPGAVMDYLADHGLYASAPFAAGSFTLFSSVLSQNGSIYRQEQVYPLRGDGI*