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SCN18_13_7_16_R1_B_scaffold_92_23

Organism: SCN18_13_7_16_R1_B_Burkholderiales_69_20

near complete RP 51 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 23504..24073

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CLN4_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 1.10e-68
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 74.6
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 3.00e-69
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACS19291.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.6
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 1.50e-68

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Taxonomy

SCN_Variovorax_21x → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
ATGTCCACGCCCGACGCCGAAACCGAACTGCACCGCCTGCTGCTGGCCGGCCTGGGCGGCGATGAAGCGGCCTACCGGCGTTTCTTGCAGTTGCTGGCGGGACACCTGCGCGCCTACCTGGCGCGGCGGCTGTTCGGCTGGCCGGACGACGTGGAGGATCTGGTGCAGGAATGTCTGCTTGCCATGCACAACAAGCGCCACACCTACCAGCCCGACCAGCCGCTCACCGCCTGGGTGCATGCCATCGCGCGCTACAAGCTGATCGACTTGCTGCGCGCCCGCGGCGCGCGCGAGGCGCTGCACGACCCGCTGGATGAGGAGATGCCCCTGTTCGCCGCCAGCACGCACGACGCGCACGATGCCCAGCGCGACCTGATGGGCATGCTGCAAAGCCTGCCCGACAAGCAGCGTCGCCCCATCGAGTGCGTGAAGATCGAGGGCCTGTCGGTGGCCGAGACGGCGCGCCTGACGGGCCTGTCCGAATCGGCCGTCAAGGTCGGCATTCACCGCGGCCTGAAGGTGCTGGCCGCGCGCTTCGGCGCCGCGCGGCGCCTGGAGGGCCACGCATGA
PROTEIN sequence
Length: 190
MSTPDAETELHRLLLAGLGGDEAAYRRFLQLLAGHLRAYLARRLFGWPDDVEDLVQECLLAMHNKRHTYQPDQPLTAWVHAIARYKLIDLLRARGAREALHDPLDEEMPLFAASTHDAHDAQRDLMGMLQSLPDKQRRPIECVKIEGLSVAETARLTGLSESAVKVGIHRGLKVLAARFGAARRLEGHA*