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SCN18_13_7_16_R1_B_scaffold_1273_8

Organism: SCN18_13_7_16_R1_B_SCNpilot_P_inoc_Stenotrophomonas_69_27_68_91

near complete RP 52 / 55 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 4866..9059

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 1397.0
  • Bit_score: 2563
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 1397.0
  • Bit_score: 2561
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000312F12B similarity UNIREF
DB: UNIREF100
  • Identity: 93.4
  • Coverage: 1397.0
  • Bit_score: 2569
  • Evalue 0.0

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4194
ATGACGTCCTATTCGTACACCGAAAAAAAGCGCATCCGCAAGGATTTCGGCAAGCAGCGCTCGATCCTCGAGGTGCCGTTCCTGCTGGCCATCCAGGTCGACTCGTACCGCGAGTTCCTGCAGGAAAACGTTGATCCGGCCAAGCGCTCCGACCACGGCCTGCACGCCGCGCTGAAGTCGGTGTTCCCGATCTCCAGCTACAGCGGCAATGCCGCCCTGGAGTACGTGGGCTACAAGCTGGGCGAGCCGGTGTTCGACGAGCGCGAGTGCCGCCAGCGTGGCATGAGCTACGGCGCGCCGCTGCGCGTGACCGTGCGCCTGGTCATCTACGACAAGGAATCGTCCACCAAGGCGATCAAGTACGTGAAGGAGCAGGAGGTCTACCTCGGCGAGATCCCGCTGATGACCGACAACGGCACCTTCATCGTCAACGGTACCGAGCGCGTCATCGTGTCGCAGCTGCACCGTTCGCCGGGCGTGTTCTTCGACCACGACCGCGGCAAGACCCACAGCTCGGGCAAGCTGCTGTACAGCGCCCGCATCATCCCCTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACCCGAAGGATGCGCTGTTCACCCGTATCGACCGCCGCCGCAAGCTGCCGGTGTCGATCCTGCTGCGCGCACTCGGCTACAACAACGAAGAAATGCTCAACGAGTTCTTCGACATCAACACCTTCCACATCCTGCCGGAAGGCGAGGGTGTGCAGCTGGAGCTGGTGGCCGAGCGCCTGCGTGGCGAAACCCTGGGCTTCGACCTGGCTGATGGCGACAAGGTCATCGTGGAAGCCGGCAAGCGCATCACCGCGCGCCACGTCAAGCAGCTGCAGGCCTCGGGCATCGCCGCGTTGGCCGTGCCGGACGACTACCTGGTCGGCCGCATCCTGTCGCACGACGTCGTCGACGCCAACACCGGCGAGCTGCTGGCCCAGGCCAACGACGAGATCACCGACGAGCAGCTGCAGAACTTCCGCAAGGCTGGCGTGGACGCGGTCGGCACCCTGTGGGTGAACGACCTGGACCGCGGTCCGTACCTGTCCAACACCCTGCGCATCGACCCGACCAAGACCCAGCTCGAGGCCCTGGTCGAGATCTACCGCATGATGCGCCCGGGCGAGCCGCCGACCAAGGACGCCGCGCAGAACCTGTTCCACAACCTGTTCTTCACCTTCGAGCGCTACGACCTGTCCACGGTCGGCCGCATGAAGTTCAACCGCCGTGTCGGCCGCAAGGAAGTCACCGGCGAGGCCGTGCTGTACGACCAGAAGTACTTCGGCGAGCGCAACGACGAGGAGTCCAAGCGCCTGGTCGCCGCGCACGGCGAGGGTTCTGACATCCTGGACGTGATCAAGGTCCTGACCGAGATCCGCAACGGTCGCGGCGTGGTCGATGACATCGACCACCTGGGCAACCGTCGCGTGCGTTCGGTCGGCGAAATGGCCGAGAACGTGTTCCGCGTCGGCCTGGTCCGCGTCGAGCGCGCGGTCAAGGAGCGCCTGTCGATGGCCGAGTCCGAGGGCCTGACCCCGCAGGAGTTGATCAACGCCAAGCCGGTGGCCGCTGCGATCAAGGAGTTCTTCGGCTCCTCGCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTGTCGGAAGTGACGCACAAGCGCCGCGTCTCGGCGCTGGGCCCGGGCGGCCTGACCCGCGAGCGCGCCGGCTTCGAAGTGCGCGACGTGCACCCGACCCATTACGGTCGCGTCTGCACCATCGAAACCCCTGAAGGCCCGAACATCGGCCTGATCAACTCGCTGGCCGTGTTCGCCCGCACCAACCAGTACGGTTTCCTCGAGACCCCGTACCGCAAGGTCGTGGACGGAAAGGTCACCGACGACGTCGAGTACCTGTCGGCGATCGAGGAGAACGAGTACGTCATCGCCCAGGCCAACGCCCTGACCGATGCCAAGAACATGCTCACCGAGCAGTTCGTGCCGTGCCGCTACCAGGGCGAGTCGCTACTGAAGCCGCCGGCGGAAGTGCACTTCATGGACGTCTCGCCGATGCAGACCGTGTCGGTCGCCGCGGCGCTGGTGCCGTTCCTCGAGCACGACGACGCCAACCGCGCGCTGATGGGCGCGAACATGCAGCGCCAGGCCGTGCCGACCCTGCGCGCGCAGAAGCCGCTGGTGGGTACCGGCATCGAGCGCGCCGTGGCGCGCGACTCGGGCGTGACCGTGAACGCCCGTCGCGGCGGTGACATCGTGCAGATCGACGCTGGCCGCATCGTGGTCAAGGTCAACGAGAACGAGATCACCGATGCCGCCGACGCCGGCGTCGACATCTACAACCTGATCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAACGTGGGCGACGTGATCGCGCGCGGCGACGTGCTGGCCGACGGCCCGTCCACCGACATCGGTGAACTGGCGCTGGGCCAGAACATGCTGATCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCCTGCTCTCCGAGCGCGTGGTGGAAGAGGATCGCTACACCACGATCCACATCGAAGAGCTGACCTGCGTCGCGCGCGACACCAAGCTGGGGCCGGAGGAAATCTCCGCCGACATCCCGAACGTCTCCGAGCAGGCGCTGAACCGCCTGGACGAGAGCGGCGTGGTGTACATCGGTGCGGAAGTCCGCGCCGGCGACATCCTGGTCGGCAAGGTCACGCCGAAGGGCGAAAGCCAGCTGACCCCGGAAGAGAAGCTGCTGCGCGCGATCTTCGGCGAGAAGGCTTCGGACGTTAAGGACAGCTCGCTGCGCGTTCCGCCGGGCATGGACGGCACCGTCATCGACGTGCAGGTCTTCACCCGCGACGGCATCGAGAAGGACAAGCGCGCGCGCCAGATCGAAGAGAACGAGATCAAGCGCGTCAAGAAGGACTTCGACGACCAGTTCCGCATCCTGGAAGCGGCGATCTACGCGCGCCTGCGCTCGCAGATCGTCGGCAAGGTGGCCAACGGCGGTGCCGGCCTGAAGAAGGGCGACACCATCAGCGACGCCCTCCTCGACGGCCTGAAGAAGGCCGACTGGTTCACCCTGCGCATGAAGGACGAGGACGCCTCCGAAGCCATCGAGCGCGCGCAGAAGCAGATCCAGGCGCACGAGAAGGAATTCGAGCGTCGCTTCGCCGACAAGCGCGGCAAGATCACCCAGGGCGACGACCTCGCTCCGGGCGTGCTGAAGATGGTCAAGGTGTTCCTGGCCGTGAAGCGCCGCATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTGGTCTCCAACGTGGTGCCGGTCGAGGACATGCCGTACATGGCCGACGGTACTTCGGTGGACATCTGCCTGAATCCGCTGGGCGTGCCGTCGCGTATGAACATCGGCCAGATCCTCGAGGTGCACCTGGGCTGGGCCGCCAAGGGCCTGGGCAAGCGCATCCAGAAGATGCTGGAGCAGCAGCGTGCGGTGAACGAGCTGCGCGAGTTCCTCGGCAAGATCTACAACCACGACACCAAGCTGGCCGGCGATCGCGTCGACCTGTCGCAGTTCAGCGATGAAGAGTTGGTGGCGCTGGCCAAGAACCTGACCGACGGCGTGCCGATGGCCACCCCGGTGTTCGACGGCGCGCACGAGGACGAGATCCGCGAGATGCTGAACCTGGCGTACCCGGACGGCGACAAGGACACCGAGCAGCTGGGCTTCAACGGCAGCAAGACGCAGATGCAGCTGTACGACGGCCGCACCGGCGAGGCGTTCGACCGCAAGACAACCGTCGGCTACATGCACTACCTGAAGCTGAACCACCTGGTCGACGACAAGATGCACGCCCGTTCGACCGGCCCGTACTCGCTCGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAGATGGAAGTCTGGGCGCTGGAAGCCTACGGCGCGGCCTACACCCTGCAGGAAATGCTGACGGTGAAGTCCGACGACGTGCAGGGCCGCAACCAGATGTACAAGAACATCGTCGACGGCGAGCACGAGATGGTCGCGGGCATGCCGGAATCCTTCAACGTGCTGGTGAAGGAAATCCGCTCCCTGGCCATCAACATGGAACTGGAAGACAACTGA
PROTEIN sequence
Length: 1398
MTSYSYTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRSDHGLHAALKSVFPISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDKESSTKAIKYVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLNEFFDINTFHILPEGEGVQLELVAERLRGETLGFDLADGDKVIVEAGKRITARHVKQLQASGIAALAVPDDYLVGRILSHDVVDANTGELLAQANDEITDEQLQNFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEVTGEAVLYDQKYFGERNDEESKRLVAAHGEGSDILDVIKVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLETPYRKVVDGKVTDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVPCRYQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRAQKPLVGTGIERAVARDSGVTVNARRGGDIVQIDAGRIVVKVNENEITDAADAGVDIYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGAGLKKGDTISDALLDGLKKADWFTLRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMADGTSVDICLNPLGVPSRMNIGQILEVHLGWAAKGLGKRIQKMLEQQRAVNELREFLGKIYNHDTKLAGDRVDLSQFSDEELVALAKNLTDGVPMATPVFDGAHEDEIREMLNLAYPDGDKDTEQLGFNGSKTQMQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINMELEDN*