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SCN18_13_7_16_R1_B_scaffold_1273_9

Organism: SCN18_13_7_16_R1_B_SCNpilot_P_inoc_Stenotrophomonas_69_27_68_91

near complete RP 52 / 55 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 9150..13376

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.5
  • Coverage: 1407.0
  • Bit_score: 2589
  • Evalue 0.0
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 1407.0
  • Bit_score: 2588
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=2 Tax=Stenotrophomonas RepID=B8L0E0_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 93.5
  • Coverage: 1407.0
  • Bit_score: 2589
  • Evalue 0.0

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4227
ATGAAAGACCTGCTCAATCTCTTCAACCAGCAGCGCCAGACGCTGGACTTCGACGCGATCAAGATCGGCCTGGCTTCGCCGGACCTGATCCGCTCCTGGTCCTTCGGCGAGGTGAAGAAGCCGGAAACCATCAATTACCGCACCTTCAAGCCGGAACGCGACGGCCTGTTCTGCGCCGCCATCTTCGGCCCGGTGAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCATGAAGCACCGCGGCGTCGTGTGCGAGAAGTGCGGCACCGAAGTGACCCTGGCCAAGGTGCGCCGCGAGCGCATGGGCCACATCGACCTGGCTTCGCCGGTCGCCCACATCTGGTTCCTCAAGTCGCTGCCGTCGCGCATCGGCCTGATGCTGGACATGACCCTGCGCGACATCGAGCGCGTGCTGTACTTCGAAGCCTACGTGGTGACCGAGCCGGGCCTGACCGCCCTGGAGCGCCGCCAGCTGCTGACCGAAGAACAGTACCTGCAGGCACGCCAGGAGCACGGCGACGACTTCGACGCCGCCATGGGCGCCGAAGCCGTGTACGAACTGCTGCGCACCATCGACCTGCAGGCCGAAATGGTGAAGCTGCGCGAGGAAATCGCCTCCACCGGTTCGGAAACCAAGCTCAAGCGCCTGACCAAGCGCATCAAGCTGGTCGAAGCCTTCCTCGAGTCGGGCAACCGTCCGGAGTGGATGGTGATGACCGTGCTGCCGGTGCTGCCGCCGGATCTGCGCCCGCTGGTGCCGCTGGACGGTGGCCGCTTCGCGACCTCCGACCTGAACGATCTGTACCGCCGCGTCATCAACCGCAACAACCGCCTGCGCCGCCTGCTGGAGCTCAATGCTCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAATCGGTTGACGCCCTGCTGGACAACGGCCGCCGTGGCCGTGCCATCACCGGCACCAACAAGCGCCCGCTCAAGTCGCTGGCCGACATGATCAAGGGCAAGCAGGGTCGCTTCCGCCAGAACCTGCTCGGCAAGCGCGTCGACTACTCCGGCCGTTCGGTGATCACCGTCGGTCCGTACCTGAAGCTGCACCAGTGCGGCCTGCCGAAGAAGATGGCGCTGGAGCTGTTCAAGCCGTTCGTCTTCGCCAAGCTGCAGCGTCGTGGCCTGGCCACCACCATCAAGGCCGCCAAGAAGCTGGTCGAGCGCGAGGAAGGCGAAGTCTGGGACATCCTGGAAGAAGTCATCCGCGAGCATCCGGTGCTGCTGAACCGCGCGCCGACCCTGCACCGCCTCGGCATCCAGGCGTTCGAGCCGCTGCTGATCGAGGGCAAGGCCATCCAGCTGCACCCGCTGGTCTGCACCGCGTTCAACGCCGACTTCGACGGTGACCAGATGGCCGTCCACGTGCCGCTCTCGCTGGAAGCCCAGCTGGAAGCGCGCGCGCTGATGATGTCCACCAACAACATCCTGTCGCCGGCCAACGGCGAGCCGATCATCGTGCCGTCGCAGGACGTGGTGTTGGGCCTGTACTACCTCAGCCGTGCCCTGATCAACAAGAAGGGCGAGGGCATGGTGTTCGCCAACACCAACGAAGTGAAGCGCGCCTACGACAACCGCGTGGTCGAGCTGCACGCCCGGGTCAAGGTGCGCATCACCCAGGTCGAGCGCGACGAACAGGGCAACAAGGTCAGCAAGGCCTCGATCCAGGACACGACCGTCGGCCGTGCGCTGCTGAGCGAGATCATGCCCGAGGGCCTGCCGTTCGAGCTGTGCAACACCGAGATGACCAAGAAGAACATCTCGCGCCTGATCAACCAGAGCTACCGCCTGCTGGGCCTGAAGGACACCGTGGTGTTCGCCGACAAGCTGATGTACACCGGCTATGCCTACGCGACCCGCGCCGGCGTGTCGATCGGCATCGACGACATGCTGATCCCGGACGAGAAGAAGGGCATCCTGGGCGAAGCCGAGCAGGAAGTGCTGGAAATCCAGGAACAGTACCAGTCGGGCCTGGTCACCGCCGGCGAGCGCTACAACAAGGTGGTCGACATCTGGTCGCGCACCAACGAGCGCATCGCCAAGGCGATGATGGAAACCATCGGTACCGAGAAGGTCGAGGACGCCGAAGGCAAGACCGTCGACCAGAAGTCGATGAACTCGCTGTACATCATGGCCGACTCCGGCGCCCGTGGTAGCCAGGCGCAGATCCGCCAGCTGGCCGGCATGCGCGGCCTGATGGCCCGCCCGGACGGCTCGATCATCGAGACGCCCATCAAGGCGAACTTCCGCGAAGGCCTGAACGTGCAGGAGTACTTCAACTCCACCCACGGTGCCCGCAAGGGTCTGGCCGATACGGCGCTGAAGACGGCGAACTCGGGTTACCTGACCCGCCGCCTGGTCGACGTGGCGCAGGACGTGGTGATCACCGAAGTCGACTGCGGCACCGTCGAAGGCCTGACCATGACCCCGATCGTGGAAGGCGGCGACGTGGTCGAGCCGTTGAAGGACCGCGTGCTGGGCCGCGTCGTGGCCGAGGACGTGTTCCTGCCGGGCAACGACGAGGATCCGATCGTCACCCGCAACACGCTGCTCGACGAGCAGTGGGTGAACAAGCTGGAAGAAGCCGGCGTGCAGTCGATCAAGGTGCGCTCGACCATCACCTGCGAATCGGCCTTCGGCGTCTGCGGCCGCTGCTACGGCCGCGACCTGGCCCGTGGCCACATCGTCAACATCGGCGAAGCGGTCGGCGTCATCGCCGCGCAGTCGATCGGCGAGCCGGGTACCCAGCTGACCATGCGTACGTTCCACATCGGTGGTGCGGCATCGCGTGCGGCGGCGGTGGACAACATCACCGTCAAGACCACCGGTTCGGTCAAGTTCAACAACCTCAAGCACGTCGACCACGCCAACGGTTCGCTGGTGGCGGTGTCGCGTTCGGGCGAAGTGTCGGTGCTCGATGCCCACGGCCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGCGCCACCATCACCGTCAAGGACGGCGCCGAGATCAAGGCTGGCCAGACCGTGGCCAACTGGGATCCGCATAACCACCCGATCGTGTCCGAAGTGGCCGGTTTCATCCGCTTCATCGACTTCGTCGACGGCATCACCGTCATCGAGAAGACCGATGAGCTGACCGGTCTGGCGTCGCGCGAAATCACCGATCCGAAGCGTCGTGGCTCGCAGGCCAAGGATCTGCGTCCGCTGGTCCGCATCGTCGATGGCAAGGGCAACGACCTGACCATCCCGGGCACCGACCTGCCGGCGCAGTACCTGCTGCCGCCGCGTTCGATCGTCAACCTGCAGGATGGCGCGCCGGTGGGCGTGGGCGACGTGGTCGCCAAGATCCCGCAGGAGGCGTCGAAGACCCGCGACATCACCGGTGGTCTGCCGCGCGTGGCCGACCTGTTCGAAGCGCGCAAGCCGAAGGATCCGGCGATCCTGGCCGAGCGTTCGGGCATCATCAGCTTCGGCAAGGACACCAAGGGCAAGCAGCGCCTGATCATCAAGGACACCGATGGTTCCGAGCACGAAGAGCTGATCCCGAAGTACCGCCAGATCATCGTGTTCGAAGGCGAGCACGTGACCCGCGGTGAAACCGTGGTGGACGGCGAGCCGAGCCCGCAGGACATCCTTCGCCTGAAGGGCGTGGAGGAACTGGCGCGCTACCTGGTCAAGGAAATCCAGGACGTGTACCGCCTGCAGGGCGTGAAGATCAACGACAAGCACATCGAAGTGATCTCGCGCCAGATGCTGCGCAAGGTCGAGATCATCGACCAGGGCGGCAGCAAGTTCCTCAATGGCGAGCAGGCCGAGCGCCAGCGCGTGATCGAGGAAAACGCCAGGCTGGCGTCCCGCAACGAGCTGCCGGCCCGCTTCGAGCCGGTGCTGCTGGGCATCACCAAGGCTTCGCTGGCGACCGAGTCGTTCATCTCGGCGGCGTCGTTCCAGGAAACCACCCGCGTGCTGACCGAGGCGGCCGTGCGCGGCACCGCCGACAACCTGCGCGGCCTGAAGGAAAACGTGATCGTCGGCCGCCTGATTCCGGCGGGTACCGGCCTTGCGTACCATACCAAGCGCCGTCGCGGCGCCTCCGGCCTGACCGAGTCGGAGATCGAGACCCTGGCCGGTACGGCCGCGGTGGTCGAGTCGGAGGTCGCGTCGACTGAAGCTGAACAGGCTGCAGGCGGCGAGGAATGA
PROTEIN sequence
Length: 1409
MKDLLNLFNQQRQTLDFDAIKIGLASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAAIFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAMGAEAVYELLRTIDLQAEMVKLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEGEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYLSRALINKKGEGMVFANTNEVKRAYDNRVVELHARVKVRITQVERDEQGNKVSKASIQDTTVGRALLSEIMPEGLPFELCNTEMTKKNISRLINQSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILGEAEQEVLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMETIGTEKVEDAEGKTVDQKSMNSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTVEGLTMTPIVEGGDVVEPLKDRVLGRVVAEDVFLPGNDEDPIVTRNTLLDEQWVNKLEEAGVQSIKVRSTITCESAFGVCGRCYGRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVKFNNLKHVDHANGSLVAVSRSGEVSVLDAHGRERERYKLPYGATITVKDGAEIKAGQTVANWDPHNHPIVSEVAGFIRFIDFVDGITVIEKTDELTGLASREITDPKRRGSQAKDLRPLVRIVDGKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTRGETVVDGEPSPQDILRLKGVEELARYLVKEIQDVYRLQGVKINDKHIEVISRQMLRKVEIIDQGGSKFLNGEQAERQRVIEENARLASRNELPARFEPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTADNLRGLKENVIVGRLIPAGTGLAYHTKRRRGASGLTESEIETLAGTAAVVESEVASTEAEQAAGGEE*