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SCN18_10_11_15_R5_P_scaffold_55_34

Organism: SCN18_10_11_15_R5_P_Alphaproteobacteria_68_131

near complete RP 47 / 55 BSCG 51 / 51 ASCG 11 / 38 MC: 1
Location: comp(32003..32902)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF80_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 69.7
  • Coverage: 287.0
  • Bit_score: 386
  • Evalue 1.90e-104
RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:EWY42465.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 296.0
  • Bit_score: 417
  • Evalue 8.20e-114
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 67.3
  • Coverage: 300.0
  • Bit_score: 389
  • Evalue 8.20e-106

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Taxonomy

SCNPILOT_EXPT_1000_BF_Afipia_62_8 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
GTGCCGCCTGACGAGGCCACGATCACGTTCGAGGCGCACCGCCCGCGGCTGGTGCGCCTCGCCTATCGCATGCTCGGCTCGATGAGCGAGGCCGAGGATATCGTGCAGGACGGCTGGCTGCGCTGGCGCCGGGTCGATCACGGACGGGTGCGCGAGCCCGCCGCTTTCCTGACCCGCACCGTGACCCGTCTCTGCCTCGACGCGATGAAGTCGGCACGCGCACGCCGCGAGGCCTATGTCGGTCCCTGGCTGCCGGAGCCGGTGCTGGACACGGTCTTCCGGCCCGGCGACGACGACCTGCGTCTCGACGAACTCACCCTTACGCTGATGCTGGCGCTGGAACGGCTGTCGCCGCTCGAGCGGGCGGCCTTCCTGCTGCACGATGTCTTCGATGTCGGCCTGGACGAAGTGGCGGCGACGTTGCGACGCGACGCCGCGGCGGTCCGCCAACTGGCGGTGCGGGCGCGCCGCCACGTCCGCGAGGCGCGGCCGCGCTATCCCGTCGGCCGGGAGGAAGGTGATCGCATCGCGATGGCCTTCTTTGCCGCCGCCTCGAGCGGCGATCTCGACGGACTTCGCTCGATGCTTGCAGATGCTGTCGTGCTGCAGTCGGACGGCGGCGGCAAGGTCACGGCCTTCCGCAATCCGATCGTCGGGCTGGATCGTGTCCTGCGCCTTTTTGCCGGATTGCGGCGCAAGCCGGCGACACCCCCGGCGGTGCTGATCCGCCCGGCGTGGATCGATGGGCTGCCGGGCTTTGTCAGTCGCGAACGAGACGCCGTGCTGCAGACGACGGCACTCGATATCGAAGGCGGCCGCATCGTCGGCATTTATGTGACGCGTAATCCGGAAAAGCTGCGCGGCATCGAGGTCATGCCAGGGATGCCAGCGCTCCCCTGA
PROTEIN sequence
Length: 300
VPPDEATITFEAHRPRLVRLAYRMLGSMSEAEDIVQDGWLRWRRVDHGRVREPAAFLTRTVTRLCLDAMKSARARREAYVGPWLPEPVLDTVFRPGDDDLRLDELTLTLMLALERLSPLERAAFLLHDVFDVGLDEVAATLRRDAAAVRQLAVRARRHVREARPRYPVGREEGDRIAMAFFAAASSGDLDGLRSMLADAVVLQSDGGGKVTAFRNPIVGLDRVLRLFAGLRRKPATPPAVLIRPAWIDGLPGFVSRERDAVLQTTALDIEGGRIVGIYVTRNPEKLRGIEVMPGMPALP*