ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1290_4

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: 3877..4548

Top 3 Functional Annotations

Value Algorithm Source
Putative glycerol metabolism activator AgmR n=2 Tax=Oligotropha carboxidovorans RepID=B6JDD3_OLICO similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 222.0
  • Bit_score: 382
  • Evalue 2.00e-103
LuxR family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 222.0
  • Bit_score: 382
  • Evalue 5.70e-104
Putative glycerol metabolism activator AgmR {ECO:0000313|EMBL:AEI07923.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 222.0
  • Bit_score: 382
  • Evalue 2.80e-103

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Afipia_62_8 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 672
ATGCCACTCTCCAATACGCATCTGGTCATTGCCGATGATCACCCGCTGTTTCGCGGCGCCTTGCGCGAAGCGGTCGCCAGTGTCGTGCCGTCGGCCCGCATCGAGGAAGCCGGCTCATTCGGCGATCTCACGGCGCTCTTGGAGCGCGACCCCGAGCTCGATCTGATCCTGCTTGATCTGTCGATGCCGGGGATCAGCGGGTTCTCCGGGCTGATCTATCTGCGGGCGCAATATCCGGCGATCCCGGTGGTGATCGTTTCCGCCAGCGATGATGGCGAAACCATTCGCCGCTCGATGGAGTTCGGAGCATCCGGCTTCATTCCCAAGCGCTTTGGCGTTGAAACGCTGCGCGAGGCGATCGGCAAGGTGATGAACGGCGACGTCTGGATCCCCTCCGACATCGATCTCTCCGCCAATGCGGACCCCGATTTGACCAAGCTGCGCGACCGCCTCGTCACGCTGACGCCGCAGCAGGTGCGGGTTCTGATGATGCTGTCCGAAGGTTTGCTCAACAAGCAGATCGCCTACGAGCTCAGCGTCTCGGAGGCCACCATCAAGGCGCATGTCTCGGCGATTCTGCAGAAGCTCGGCGTTGAAAGCCGCACCCAGGCGGTGATCGTCGCAGCGAAGATTTCCGGCGGGCAATGGCGCCAGCGCGAGCCGTCGGCCTGA
PROTEIN sequence
Length: 224
MPLSNTHLVIADDHPLFRGALREAVASVVPSARIEEAGSFGDLTALLERDPELDLILLDLSMPGISGFSGLIYLRAQYPAIPVVIVSASDDGETIRRSMEFGASGFIPKRFGVETLREAIGKVMNGDVWIPSDIDLSANADPDLTKLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELSVSEATIKAHVSAILQKLGVESRTQAVIVAAKISGGQWRQREPSA*