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SCN18_30_10_14_R3_B_scaffold_1806_3

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(946..2613)

Top 3 Functional Annotations

Value Algorithm Source
rpoN; RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 79.5
  • Coverage: 556.0
  • Bit_score: 863
  • Evalue 2.10e-248
RNA polymerase sigma-54 factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWD3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 80.5
  • Coverage: 560.0
  • Bit_score: 873
  • Evalue 7.20e-251
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 560.0
  • Bit_score: 873
  • Evalue 1.00e-250

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Taxonomy

SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1668
ATGGCGATCACACAACGTTTGGAGTTCCGCCAGTCGCAGTCGCTGGTGATGACGCCGCAGCTCATGCAGGCGATCAAGCTGCTGCAACTGTCGAACCTCGATCTGGCCGCCTTTGTCGAGGAGGAACTCGAACGCAATCCGCTGCTGGAGCGTGCCAGCGACGACGAGCCGCGCGGCGAGGGGACGATGGAAGCCGCCCCCGACCGCGCCCCGTCGTCGACAGATGGCGGCGAGGAGGATTTCGGCGCCTCGTCAGCGTCGGACGCCGATGGTCCGGCATCGCGCGAAAGTTTCGATGCTCCGGCGGAAGACTGGATCAACCGCGATCTCGGCAGCCGCGCCGACATGGAGCAGACCTTCGACAGCGGCCTCGACAACGTGTTTTCCGAGGAGCCTGCGGAAGCCGCCGCGCGCAACGCGCAGGATGCGGCGCCAACCGCCTACACCGAATGGGGCGGTGGCGCTTCGAACGACGACGACTACAATCTGGAGGCGTTCGTCGCCGCCGAGCTGTCGCTGCACGATCATCTCGCCGAGCAGCTCGCGGTGTCGATCATCGATCCGTCGCAACGCATGATCGGCCAGTACCTGATCGATCTGGTGGATGATGCCGGCTATCTGCCGGCTGATCTCGGACAGGCGGCGGAACGGCTCGGCGCGACGCAGGACGCGGTCGACGCCGTGCTCGCGGTGCTGCAGACCTTTGACCCGCCCGGCATCTGCGCGCGCTCGCTCAGCGAATGCCTCGCCATTCAACTGCGCGAACGCGACCGTTTTGATCCGGCGATGCAGGCGCTGGTCGAACATCTTGATCTGCTCGCCAAACGCGACATTGCCGGTCTGCGCAAGATCTGCGGCGTCGATGACGAGGACATTGCCGAGATGATCGGCGAGATCCGTCATCTCGATCCCAAGCCCGGTCTGAAATTCGGATCGACCCGGACGCAGACCGTGGTGCCGGACGTGTATGTGCGTCCCGGCCCCGATGGCGGCTGGCTGGTCGAACTCAACAGCGACACCTTGCCGAAGGTGCTTGTCAACCAGAGCTATTATGCGGAGTTGTCGAAAACAACGCGCAAGGATGGCGAGAAATCCTATTTCACCGATTGTCTGCAGAACGCGACCTGGCTGGTGCGCGCGCTGGATCAGCGCGCCCGCACCATCCTGAAAGTGGCGTCTGAGATCGTGCGGCAGCAGGACGGCTTTTTCACGCAGGGCGTGGCATATTTGCGCCCGCTCAATCTGAAGGCGGTCGCCGATGCTATCCAGATGCATGAATCGACCGTTTCGCGGGTGACCGCCAACAAGTACATGGCGACCAGCCGCGGTATTTTTGAATTGAAATATTTCTTCACCGCTTCGATCGCATCGGCGGACGGCGGGGAGGCGCATTCCGCCGAATCGGTAAGGCACCGCATCAAACAGCTGATCGACGCCGAAGAGCCAGGTGCTATACTGTCAGACGATACGCTGGTGGAACGTTTGCGTGGTGACGGCATTGATATCGCCCGAAGAACGGTCGCGAAGTATCGTGAGGCCATGCGAATTCCGTCATCGGTGCAGCGTCGCCGCGATAAGCAGGGCATGCTCGGCCATGCTCTCACCACAACGACGCCATCGTCATCATCATCGTCCACCGACCGATCCCGCGACACCGCCCCGGCTTGA
PROTEIN sequence
Length: 556
MAITQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLAAFVEEELERNPLLERASDDEPRGEGTMEAAPDRAPSSTDGGEEDFGASSASDADGPASRESFDAPAEDWINRDLGSRADMEQTFDSGLDNVFSEEPAEAAARNAQDAAPTAYTEWGGGASNDDDYNLEAFVAAELSLHDHLAEQLAVSIIDPSQRMIGQYLIDLVDDAGYLPADLGQAAERLGATQDAVDAVLAVLQTFDPPGICARSLSECLAIQLRERDRFDPAMQALVEHLDLLAKRDIAGLRKICGVDDEDIAEMIGEIRHLDPKPGLKFGSTRTQTVVPDVYVRPGPDGGWLVELNSDTLPKVLVNQSYYAELSKTTRKDGEKSYFTDCLQNATWLVRALDQRARTILKVASEIVRQQDGFFTQGVAYLRPLNLKAVADAIQMHESTVSRVTANKYMATSRGIFELKYFFTASIASADGGEAHSAESVRHRIKQLIDAEEPGAILSDDTLVERLRGDGIDIARRTVAKYREAMRIPSSVQRRRDKQGMLGHALTTTTPSSSSSSTDRSRDTAPA*