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SCN18_30_10_14_R3_B_scaffold_2941_6

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(8133..8846)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.4
  • Coverage: 237.0
  • Bit_score: 441
  • Evalue 5.50e-121
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 92.4
  • Coverage: 237.0
  • Bit_score: 431
  • Evalue 1.10e-118
DNA-directed RNA polymerase subunit beta' n=2 Tax=Bradyrhizobiaceae RepID=F7QQ08_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 95.4
  • Coverage: 237.0
  • Bit_score: 441
  • Evalue 3.90e-121

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Afipia_61_20 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 714
AAGCGCCGCATCTCGATCGAGCCGGTGGACAAGACCGAGGAGACCCGCGAGTACCTGATCCCGAAGGGCAAGCACATCCACCTGCAGGACGGCGACATAGTCGAAAAGGGCGATTTCATCGTCGAGGGCAATCCGGCGCCGCACGACATCCTGGCGATCAAGGGCATCGAGGAACTCGCGGCCTATCTGGTCAACGAAATCCAGGAGGTCTACCGGCTCCAGGGCGTGCTCATCAACGACAAGCACATCGAGGTGATTGTCCGTCAGATGCTGCAGAAGGTGGAGATCACCGACCAGGGCGAGACCGACATGATCTCGGGCGAGCAGATCGACAAGATCGAGTTCGACGCGCTCAATGCCAAGGCCAAGGACGAGGGCAAGAAGCCCGCGACCGGCAACCCGGTGTTGCTCGGCATCACCAAGGCGTCGCTGCAGACCCGCTCGTTCTTCTCGGCGGCCTCGTTCCAGGAAACCACCCGCGTGCTCACCGAAGCCGCCGTCAACGGCAAGGTGGACCCGCTCGAGGGCCTCAAGGAGAACGTCATTGTCGGCCGCCTGATCCCGGCCGGTACCGGCGCCTCGATGGCCCGGATCCGCGAGGTCGCGGTCAAGCGCGACAAGCTGATCCTCGATGAACGCGAGAAGCAGGCGGCGATCGCGACACCCCCGGCCGCGCCGGAAGCGGAACCGCTGGCCCTGCCGCCCGCCGAATAA
PROTEIN sequence
Length: 238
KRRISIEPVDKTEETREYLIPKGKHIHLQDGDIVEKGDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITDQGETDMISGEQIDKIEFDALNAKAKDEGKKPATGNPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMARIREVAVKRDKLILDEREKQAAIATPPAAPEAEPLALPPAE*